Variant report

Variant	rs13380245
Chromosome Location	chr15:73900363-73900364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73899144..73901475-chr15:73903912..73905877,2	MCF-7	breast:
2	chr15:73900148..73903050-chr15:73913261..73914969,2	K562	blood:
3	chr15:73895579..73902471-chr15:73924238..73927727,8	MCF-7	breast:
4	chr15:73899288..73902117-chr15:73920914..73923748,3	MCF-7	breast:
5	chr15:73885880..73887947-chr15:73898760..73900668,2	K562	blood:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10162605	0.96[EUR][1000 genomes]
rs10163172	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11574480	0.82[CHB][hapmap]
rs11633159	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11638472	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11854774	0.86[EUR][1000 genomes]
rs11856313	0.82[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.86[EUR][1000 genomes]
rs12324832	0.86[EUR][1000 genomes]
rs12908815	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13380155	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481087	0.82[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs1582742	0.91[EUR][1000 genomes]
rs16957919	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16957997	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs16958019	0.86[ASW][hapmap];0.82[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16958025	0.86[EUR][1000 genomes]
rs16958041	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs16958050	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2306462	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs2415153	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs28834466	0.86[EUR][1000 genomes]
rs3889590	0.93[EUR][1000 genomes]
rs55636021	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55695286	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56190024	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56227598	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57995256	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60419012	0.86[EUR][1000 genomes]
rs6495066	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7163212	0.86[EUR][1000 genomes]
rs7163693	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164953	0.86[EUR][1000 genomes]
rs7165447	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7166673	0.82[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.86[EUR][1000 genomes]
rs7169976	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7172130	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7172448	0.82[EUR][1000 genomes]
rs7173068	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7176452	0.84[EUR][1000 genomes]
rs7177731	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs7178806	0.82[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.86[EUR][1000 genomes]
rs729155	0.82[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.84[EUR][1000 genomes]
rs8027255	0.96[EUR][1000 genomes]
rs8028749	0.82[CEU][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.86[EUR][1000 genomes]
rs8033242	0.82[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.81[EUR][1000 genomes]
rs8036438	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs8039862	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs8040552	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73894400-73901600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:73895000-73910000	Weak transcription	Hela-S3	cervix
3	chr15:73895000-73924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:73895200-73900400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:73895200-73902600	Weak transcription	Fetal Stomach	stomach
6	chr15:73895200-73921400	Weak transcription	Fetal Thymus	thymus
7	chr15:73895200-73924200	Weak transcription	Esophagus	oesophagus
8	chr15:73895400-73901000	Weak transcription	Right Ventricle	heart
9	chr15:73895400-73902400	Weak transcription	Thymus	Thymus
10	chr15:73895400-73904000	Weak transcription	Spleen	Spleen
11	chr15:73895400-73922400	Weak transcription	Colonic Mucosa	Colon
12	chr15:73895600-73900400	Weak transcription	Fetal Kidney	kidney
13	chr15:73895600-73900400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:73895600-73904000	Weak transcription	K562	blood
15	chr15:73895600-73910000	Weak transcription	HMEC	breast
16	chr15:73895800-73900400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:73895800-73900600	Weak transcription	HSMM	muscle
18	chr15:73895800-73904400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr15:73895800-73907600	Weak transcription	Stomach Mucosa	stomach
20	chr15:73895800-73909800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:73895800-73910200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:73895800-73912200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr15:73895800-73912600	Weak transcription	Brain Substantia Nigra	brain
24	chr15:73895800-73913600	Weak transcription	A549	lung
25	chr15:73895800-73923600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr15:73895800-73924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:73896200-73912400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:73896200-73912600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:73896400-73901200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:73896400-73910000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr15:73896400-73912200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:73896400-73920400	Weak transcription	Primary T cells from cord blood	blood
33	chr15:73896800-73900600	Enhancers	Stomach Smooth Muscle	stomach
34	chr15:73897000-73910200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr15:73897200-73903800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr15:73897200-73904200	Enhancers	Colon Smooth Muscle	Colon
37	chr15:73897400-73901000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:73897400-73911800	Weak transcription	Fetal Intestine Large	intestine
39	chr15:73898000-73910000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:73898200-73900400	Enhancers	Adipose Nuclei	Adipose
41	chr15:73898200-73900600	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr15:73898200-73900800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:73898200-73901800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:73898200-73904200	Enhancers	NHDF-Ad	bronchial
45	chr15:73898600-73900800	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr15:73898600-73901000	Enhancers	Fetal Lung	lung
47	chr15:73898600-73902400	Weak transcription	Ovary	ovary
48	chr15:73899000-73900400	Enhancers	Left Ventricle	heart
49	chr15:73899000-73901200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:73899000-73902000	Enhancers	Small Intestine	intestine

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