Variant report

Variant	rs55695286
Chromosome Location	chr15:73896669-73896670
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73889513..73892246-chr15:73895436..73898371,2	K562	blood:
2	chr15:73895579..73902471-chr15:73924238..73927727,8	MCF-7	breast:
3	chr15:73896021..73898122-chr15:73915228..73917012,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10162605	0.96[EUR][1000 genomes]
rs10163172	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11638472	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11854774	0.86[EUR][1000 genomes]
rs11856313	0.86[EUR][1000 genomes]
rs12324832	0.86[EUR][1000 genomes]
rs12908815	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13380155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13380245	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481087	0.84[EUR][1000 genomes]
rs1582742	0.91[EUR][1000 genomes]
rs16957919	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16957997	0.86[EUR][1000 genomes]
rs16958019	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16958025	0.86[EUR][1000 genomes]
rs16958041	0.84[EUR][1000 genomes]
rs16958050	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2306462	0.86[EUR][1000 genomes]
rs2415153	0.86[EUR][1000 genomes]
rs28834466	0.86[EUR][1000 genomes]
rs3889590	0.93[EUR][1000 genomes]
rs55636021	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56190024	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56227598	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57995256	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60419012	0.86[EUR][1000 genomes]
rs6495066	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7163212	0.86[EUR][1000 genomes]
rs7163693	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164953	0.86[EUR][1000 genomes]
rs7165447	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7166673	0.86[EUR][1000 genomes]
rs7169976	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7172130	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7172448	0.82[EUR][1000 genomes]
rs7173068	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7176452	0.84[EUR][1000 genomes]
rs7177731	0.91[EUR][1000 genomes]
rs7178806	0.86[EUR][1000 genomes]
rs729155	0.84[EUR][1000 genomes]
rs8027255	0.96[EUR][1000 genomes]
rs8028749	0.86[EUR][1000 genomes]
rs8033242	0.81[EUR][1000 genomes]
rs8036438	0.91[EUR][1000 genomes]
rs8039862	0.84[EUR][1000 genomes]
rs8040552	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73892200-73897400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr15:73893200-73897200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr15:73894000-73897000	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr15:73894400-73896800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr15:73894400-73901600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:73894600-73897400	Enhancers	Fetal Heart	heart
7	chr15:73895000-73897400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr15:73895000-73898200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:73895000-73898800	Enhancers	Rectal Smooth Muscle	rectum
10	chr15:73895000-73910000	Weak transcription	Hela-S3	cervix
11	chr15:73895000-73924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:73895200-73897000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:73895200-73898200	Weak transcription	Ovary	ovary
14	chr15:73895200-73899200	Weak transcription	Aorta	Aorta
15	chr15:73895200-73899400	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:73895200-73900400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:73895200-73902600	Weak transcription	Fetal Stomach	stomach
18	chr15:73895200-73921400	Weak transcription	Fetal Thymus	thymus
19	chr15:73895200-73924200	Weak transcription	Esophagus	oesophagus
20	chr15:73895400-73897200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:73895400-73897200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:73895400-73897800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr15:73895400-73898200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:73895400-73898400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:73895400-73899200	Weak transcription	Right Atrium	heart
26	chr15:73895400-73899600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr15:73895400-73901000	Weak transcription	Right Ventricle	heart
28	chr15:73895400-73902400	Weak transcription	Thymus	Thymus
29	chr15:73895400-73904000	Weak transcription	Spleen	Spleen
30	chr15:73895400-73922400	Weak transcription	Colonic Mucosa	Colon
31	chr15:73895600-73896800	Genic enhancers	Fetal Intestine Small	intestine
32	chr15:73895600-73897200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr15:73895600-73897200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:73895600-73897400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:73895600-73898000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr15:73895600-73898200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr15:73895600-73898200	Weak transcription	Adipose Nuclei	Adipose
38	chr15:73895600-73898200	Weak transcription	Osteobl	bone
39	chr15:73895600-73898400	Weak transcription	Small Intestine	intestine
40	chr15:73895600-73899200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr15:73895600-73899200	Weak transcription	Gastric	stomach
42	chr15:73895600-73899400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr15:73895600-73899400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:73895600-73899400	Weak transcription	HepG2	liver
45	chr15:73895600-73899800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr15:73895600-73899800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr15:73895600-73900400	Weak transcription	Fetal Kidney	kidney
48	chr15:73895600-73900400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr15:73895600-73904000	Weak transcription	K562	blood
50	chr15:73895600-73910000	Weak transcription	HMEC	breast

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