Variant report

Variant	rs7176452
Chromosome Location	chr15:73914363-73914364
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73910087..73912368-chr15:73912396..73915641,4	MCF-7	breast:
2	chr15:73914199..73916991-chr15:73975458..73977440,2	MCF-7	breast:
3	chr15:73910665..73914600-chr15:73924026..73926567,6	MCF-7	breast:
4	chr15:73900148..73903050-chr15:73913261..73914969,2	K562	blood:
5	chr15:73903840..73905741-chr15:73912777..73915445,2	MCF-7	breast:
6	chr15:73914101..73915854-chr15:73917290..73918947,3	K562	blood:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10162605	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10163172	0.84[EUR][1000 genomes]
rs11638472	0.80[EUR][1000 genomes]
rs11854774	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11856313	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12324832	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12908815	0.84[EUR][1000 genomes]
rs13380155	0.83[EUR][1000 genomes]
rs13380245	0.84[EUR][1000 genomes]
rs1481087	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16957997	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16958019	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16958025	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16958041	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16958050	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2306462	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2415153	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28834466	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3889590	0.80[EUR][1000 genomes]
rs55636021	0.84[EUR][1000 genomes]
rs55695286	0.84[EUR][1000 genomes]
rs56190024	0.84[EUR][1000 genomes]
rs56227598	0.80[EUR][1000 genomes]
rs57995256	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60419012	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495066	0.80[EUR][1000 genomes]
rs7163212	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7163693	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7164953	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7165447	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7166673	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7169976	0.84[EUR][1000 genomes]
rs7172448	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7173068	0.80[EUR][1000 genomes]
rs7178806	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs729155	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8027255	0.80[EUR][1000 genomes]
rs8028749	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8033242	0.92[EUR][1000 genomes]
rs8039862	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8040552	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73895000-73924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:73895200-73921400	Weak transcription	Fetal Thymus	thymus
3	chr15:73895200-73924200	Weak transcription	Esophagus	oesophagus
4	chr15:73895400-73922400	Weak transcription	Colonic Mucosa	Colon
5	chr15:73895800-73923600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:73895800-73924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:73896400-73920400	Weak transcription	Primary T cells from cord blood	blood
8	chr15:73899600-73924200	Weak transcription	Gastric	stomach
9	chr15:73900400-73921800	Weak transcription	Primary B cells from cord blood	blood
10	chr15:73900400-73924000	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:73901200-73915200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:73901400-73916400	Weak transcription	Fetal Kidney	kidney
13	chr15:73901400-73916800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:73901400-73920600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr15:73901600-73919800	Weak transcription	Adipose Nuclei	Adipose
16	chr15:73901800-73916600	Weak transcription	Right Ventricle	heart
17	chr15:73901800-73922400	Weak transcription	Right Atrium	heart
18	chr15:73902000-73920600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:73902800-73916800	Weak transcription	Ovary	ovary
20	chr15:73902800-73924400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:73903400-73924000	Weak transcription	Thymus	Thymus
22	chr15:73904000-73916200	Weak transcription	Fetal Stomach	stomach
23	chr15:73904800-73919200	Weak transcription	Pancreas	Pancrea
24	chr15:73904800-73921400	Weak transcription	K562	blood
25	chr15:73904800-73924200	Weak transcription	Lung	lung
26	chr15:73906000-73917000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr15:73908200-73916200	Weak transcription	Brain Anterior Caudate	brain
28	chr15:73909000-73917800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr15:73909600-73919600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr15:73909800-73917000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr15:73910200-73918600	Weak transcription	Hela-S3	cervix
32	chr15:73910200-73922400	Weak transcription	Aorta	Aorta
33	chr15:73910400-73916000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr15:73910400-73916200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:73910400-73916200	Weak transcription	HMEC	breast
36	chr15:73910400-73921200	Weak transcription	NH-A	brain
37	chr15:73910400-73922200	Weak transcription	HSMM	muscle
38	chr15:73910400-73924200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:73910600-73915600	Weak transcription	NHEK	skin
40	chr15:73910600-73916800	Weak transcription	NHDF-Ad	bronchial
41	chr15:73910600-73917000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:73910600-73920600	Weak transcription	Osteobl	bone
43	chr15:73910600-73921200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:73911000-73921600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:73911400-73917000	Weak transcription	Left Ventricle	heart
46	chr15:73911400-73920800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr15:73911800-73914400	Enhancers	Fetal Intestine Small	intestine
48	chr15:73911800-73914600	Enhancers	Duodenum Mucosa	Duodenum
49	chr15:73911800-73914600	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr15:73911800-73915600	Enhancers	Duodenum Smooth Muscle	Duodenum

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