Variant report

Variant	rs7182876
Chromosome Location	chr15:73990817-73990818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10083681	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10152645	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10152662	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1044581	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11072433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11552770	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11574479	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11574480	0.83[AFR][1000 genomes]
rs11574483	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11574484	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11574485	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11574490	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11633159	0.81[EUR][1000 genomes]
rs11636441	0.82[AFR][1000 genomes]
rs11856313	0.88[JPT][hapmap]
rs1481087	0.88[JPT][hapmap]
rs16957997	0.89[JPT][hapmap]
rs16958019	0.88[JPT][hapmap]
rs16958041	0.89[JPT][hapmap]
rs16958050	0.89[JPT][hapmap]
rs2291012	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2291014	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2306462	0.88[JPT][hapmap]
rs2415153	0.89[JPT][hapmap]
rs28506051	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28640136	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55984094	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7161756	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7166673	0.88[JPT][hapmap]
rs7173448	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7173476	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177088	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177814	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7178133	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7178806	0.88[JPT][hapmap]
rs729155	0.88[JPT][hapmap]
rs74026250	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8028749	0.88[JPT][hapmap]
rs8038012	0.95[ASN][1000 genomes]
rs8039862	0.89[JPT][hapmap]
rs899271	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs966378	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:73979400-73996400	Weak transcription	A549	lung
3	chr15:73981800-73995000	Weak transcription	Pancreas	Pancrea
4	chr15:73984600-73992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:73984600-73995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:73985400-73993600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:73986800-73992200	Weak transcription	HepG2	liver
8	chr15:73988200-73991800	Enhancers	HSMMtube	muscle
9	chr15:73988600-73992400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:73988800-73996200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:73989000-73991000	Enhancers	Brain Hippocampus Middle	brain
12	chr15:73989400-73991800	Weak transcription	Brain Anterior Caudate	brain
13	chr15:73989400-73991800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:73989400-73994200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:73989600-73991000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr15:73989600-73991400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:73989600-73991600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:73989600-73992400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr15:73989600-73992400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr15:73989600-73994200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:73989600-73994800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr15:73989600-73996200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr15:73989600-73996800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:73989800-73991400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:73989800-73991400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:73989800-73991400	Weak transcription	Liver	Liver
27	chr15:73989800-73991400	Weak transcription	Fetal Heart	heart
28	chr15:73989800-73991800	Weak transcription	Brain Angular Gyrus	brain
29	chr15:73989800-73991800	Weak transcription	Right Ventricle	heart
30	chr15:73989800-73992200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:73989800-73994600	Weak transcription	Gastric	stomach
32	chr15:73989800-73994800	Weak transcription	Colonic Mucosa	Colon
33	chr15:73989800-73995000	Weak transcription	Lung	lung
34	chr15:73989800-73995400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr15:73989800-73995800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr15:73989800-73996400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr15:73989800-73996800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr15:73989800-73997000	Weak transcription	Hela-S3	cervix
39	chr15:73989800-74000600	Weak transcription	Esophagus	oesophagus
40	chr15:73989800-74001600	Strong transcription	Fetal Intestine Small	intestine
41	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
42	chr15:73990000-73991600	Genic enhancers	NHEK	skin
43	chr15:73990000-73992200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:73990000-73992600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:73990000-73996200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr15:73990000-73997600	Weak transcription	Fetal Kidney	kidney
47	chr15:73990000-73999800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
49	chr15:73990200-73991600	Strong transcription	Osteobl	bone
50	chr15:73990200-73992600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links