Variant report

Variant	rs28506051
Chromosome Location	chr15:74007249-74007250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74006471..74009141-chr15:74023643..74026024,2	MCF-7	breast:
2	chr15:74006337..74009234-chr15:74010683..74012522,2	K562	blood:
3	chr15:74005160..74008724-chr15:74017261..74021043,5	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10083681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10152645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152662	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1044581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072433	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11552770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574479	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574480	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11574483	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11574484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574490	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636441	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2291012	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28640136	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7161756	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7173448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7173476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176174	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176484	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176701	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7177088	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7177814	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178133	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182876	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74026250	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8038012	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899271	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs966378	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
2	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
3	chr15:73990200-74007600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:73990400-74007600	Strong transcription	Fetal Stomach	stomach
5	chr15:73990600-74007400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
7	chr15:73990800-74009200	Weak transcription	Psoas Muscle	Psoas
8	chr15:73992200-74007400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:73992600-74007400	Strong transcription	Fetal Muscle Trunk	muscle
10	chr15:73993000-74007400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:73993400-74007800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:73993600-74007400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:73993600-74007400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:73993600-74007600	Strong transcription	Fetal Brain Female	brain
15	chr15:73993600-74008000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:73993800-74007400	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:73994400-74007400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:73994600-74007400	Strong transcription	Adipose Nuclei	Adipose
19	chr15:73997600-74007400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:73997600-74007600	Strong transcription	Stomach Smooth Muscle	stomach
21	chr15:73997800-74007400	Strong transcription	Fetal Muscle Leg	muscle
22	chr15:73999200-74007400	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:74002400-74008800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr15:74002800-74007600	Strong transcription	Fetal Intestine Small	intestine
25	chr15:74003000-74007400	Weak transcription	Fetal Heart	heart
26	chr15:74003200-74015400	Weak transcription	Fetal Kidney	kidney
27	chr15:74003800-74008600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:74004000-74007800	Weak transcription	HUVEC	blood vessel
29	chr15:74004000-74010000	Weak transcription	Brain Angular Gyrus	brain
30	chr15:74004000-74015400	Weak transcription	Fetal Lung	lung
31	chr15:74004200-74009800	Weak transcription	NHDF-Ad	bronchial
32	chr15:74004200-74011800	Weak transcription	Brain Substantia Nigra	brain
33	chr15:74004600-74007400	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr15:74005000-74007600	Weak transcription	Left Ventricle	heart
35	chr15:74005800-74010800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:74006000-74007800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:74006000-74008400	Weak transcription	HMEC	breast
38	chr15:74006000-74008800	Weak transcription	Esophagus	oesophagus
39	chr15:74006000-74009200	Weak transcription	NH-A	brain
40	chr15:74006000-74011400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:74006200-74008000	Weak transcription	Colonic Mucosa	Colon
42	chr15:74006200-74008600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr15:74006200-74008800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr15:74006200-74011600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr15:74006200-74015800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:74006400-74007400	Strong transcription	HSMM	muscle
47	chr15:74006400-74008200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr15:74006400-74008200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr15:74006400-74008600	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr15:74006400-74008800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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