Variant report

Variant	rs11574484
Chromosome Location	chr15:73997988-73997989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr15:73996942-73998035	SK-N-SH	brain:	n/a	chr15:73997327-73997341
2	CTCF	chr15:73997900-73998050	AG09319	gingival:	n/a	n/a
3	CTCF	chr15:73997860-73998010	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:73992648..73995502-chr15:73997951..74000936,2	MCF-7	breast:
2	chr15:73850828..73853350-chr15:73997208..73999812,2	MCF-7	breast:
3	chr15:73996776..73999738-chr15:74010371..74012368,2	MCF-7	breast:
4	chr15:73996066..73998855-chr15:74002172..74005149,2	MCF-7	breast:
5	chr15:73982397..73984992-chr15:73997157..73999264,2	MCF-7	breast:
6	chr15:73969133..73970091-chr15:73997332..73998078,2	MCF-7	breast:

No data

Variant related genes	Relation type
CD276	TF binding region
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10083681	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10152645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152662	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1044581	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11552770	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574479	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574480	0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11574483	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11574485	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633159	0.81[MEX][hapmap]
rs11636441	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11856313	0.88[JPT][hapmap]
rs1481087	0.88[JPT][hapmap]
rs16957997	0.88[JPT][hapmap]
rs16958019	0.88[JPT][hapmap]
rs16958041	0.88[JPT][hapmap]
rs16958050	0.88[JPT][hapmap]
rs2291012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306462	0.88[JPT][hapmap]
rs2415153	0.88[JPT][hapmap]
rs28506051	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28640136	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3825859	0.85[CEU][hapmap]
rs7161756	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7166673	0.88[JPT][hapmap]
rs7173448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7173476	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176174	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176484	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176701	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7177088	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7177814	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178806	0.88[JPT][hapmap]
rs7182876	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs729155	0.88[JPT][hapmap]
rs74026250	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8028749	0.88[JPT][hapmap]
rs8038012	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039862	0.88[JPT][hapmap]
rs899271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs966378	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:73989800-74000600	Weak transcription	Esophagus	oesophagus
3	chr15:73989800-74001600	Strong transcription	Fetal Intestine Small	intestine
4	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
5	chr15:73990000-73999800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
7	chr15:73990200-74007200	Weak transcription	Stomach Mucosa	stomach
8	chr15:73990200-74007600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:73990400-74007200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:73990400-74007600	Strong transcription	Fetal Stomach	stomach
11	chr15:73990600-73999400	Weak transcription	Left Ventricle	heart
12	chr15:73990600-74006600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:73990600-74007400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
15	chr15:73990800-74009200	Weak transcription	Psoas Muscle	Psoas
16	chr15:73991000-74003400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr15:73991200-74001600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:73991400-74004800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:73991400-74007200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:73992200-74007400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:73992600-74000600	Weak transcription	Brain Angular Gyrus	brain
22	chr15:73992600-74002400	Weak transcription	Fetal Heart	heart
23	chr15:73992600-74007400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr15:73992800-73999000	Weak transcription	Brain Hippocampus Middle	brain
25	chr15:73993000-74001400	Strong transcription	Fetal Intestine Large	intestine
26	chr15:73993000-74007400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:73993200-74000400	Weak transcription	HUVEC	blood vessel
28	chr15:73993200-74007000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:73993400-74006400	Strong transcription	Liver	Liver
30	chr15:73993400-74007800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:73993600-74006800	Strong transcription	NHEK	skin
32	chr15:73993600-74007400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:73993600-74007400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:73993600-74007600	Strong transcription	Fetal Brain Female	brain
35	chr15:73993600-74008000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:73993800-73998200	Strong transcription	HMEC	breast
37	chr15:73993800-74007400	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr15:73994000-74006600	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr15:73994000-74007200	Strong transcription	Brain Germinal Matrix	brain
40	chr15:73994200-74006600	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr15:73994200-74006600	Strong transcription	Aorta	Aorta
42	chr15:73994200-74007200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:73994400-74006400	Strong transcription	NHLF	lung
44	chr15:73994400-74007400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:73994600-74007400	Strong transcription	Adipose Nuclei	Adipose
46	chr15:73994800-73998000	Strong transcription	Colonic Mucosa	Colon
47	chr15:73994800-74007200	Strong transcription	Placenta Amnion	Placenta Amnion
48	chr15:73995200-74007200	Strong transcription	Placenta	Placenta
49	chr15:73995400-74006600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:73995800-74001200	Strong transcription	Rectal Mucosa Donor 29	rectum

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