Variant report
| Variant | rs1585944 |
|---|---|
| Chromosome Location | chr15:73815304-73815305 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11854138 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[EUR][1000 genomes] |
| rs11856313 | 0.82[CEU][hapmap];0.81[GIH][hapmap] |
| rs13380155 | 0.82[CEU][hapmap] |
| rs1481087 | 0.82[CEU][hapmap];0.81[GIH][hapmap] |
| rs16957997 | 0.82[CEU][hapmap] |
| rs16958019 | 0.82[CEU][hapmap] |
| rs16958041 | 0.82[CEU][hapmap] |
| rs16958050 | 0.82[CEU][hapmap] |
| rs2306462 | 0.82[CEU][hapmap] |
| rs2415150 | 0.86[EUR][1000 genomes] |
| rs2415151 | 0.86[EUR][1000 genomes] |
| rs2415153 | 0.82[CEU][hapmap] |
| rs3825859 | 0.82[ASW][hapmap];0.82[JPT][hapmap];0.83[LWK][hapmap] |
| rs3826047 | 1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7166673 | 0.82[CEU][hapmap];0.81[GIH][hapmap] |
| rs7178806 | 0.82[CEU][hapmap] |
| rs729155 | 0.82[CEU][hapmap];0.81[GIH][hapmap] |
| rs8028749 | 0.82[CEU][hapmap];0.81[GIH][hapmap] |
| rs8031286 | 0.94[EUR][1000 genomes] |
| rs8032265 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs8033242 | 0.82[CEU][hapmap];0.81[GIH][hapmap] |
| rs8039395 | 0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs8039862 | 0.82[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1037540 | chr15:73712637-73982420 | Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 2 | nsv525433 | chr15:73766072-73833600 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv904344 | chr15:73800519-73864831 | Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:73808200-73847400 | Weak transcription | Left Ventricle | heart |
| 2 | chr15:73811600-73819400 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
