Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11854138	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs11856313	0.82[CEU][hapmap]
rs13380155	0.82[CEU][hapmap]
rs1481087	0.82[CEU][hapmap]
rs1585944	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16957997	0.82[CEU][hapmap]
rs16958019	0.82[CEU][hapmap]
rs16958041	0.82[CEU][hapmap]
rs16958050	0.82[CEU][hapmap]
rs2306462	0.82[CEU][hapmap]
rs2415150	0.91[EUR][1000 genomes]
rs2415151	0.91[EUR][1000 genomes]
rs2415153	0.82[CEU][hapmap]
rs3826047	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7166673	0.82[CEU][hapmap]
rs7178806	0.82[CEU][hapmap]
rs729155	0.82[CEU][hapmap]
rs8028749	0.82[CEU][hapmap]
rs8031286	1.00[EUR][1000 genomes]
rs8032265	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs8033242	0.82[CEU][hapmap]
rs8039862	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv525433	chr15:73766072-73833600	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73773800-73775400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:73774200-73774400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr15:73774200-73775200	Enhancers	K562	blood

Quick Search: