Variant report

Variant	rs11854472
Chromosome Location	chr15:41357687-41357688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41349126..41351965-chr15:41355595..41357864,2	K562	blood:
2	chr15:41352417..41354404-chr15:41357276..41359773,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1009913	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11853192	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11855248	0.83[EUR][1000 genomes]
rs11855797	0.85[ASN][1000 genomes]
rs11856572	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11856577	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11856848	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12101934	0.84[ASN][1000 genomes]
rs12899590	0.82[EUR][1000 genomes]
rs12905926	0.84[EUR][1000 genomes]
rs12910027	0.84[EUR][1000 genomes]
rs1678750	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1717200	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1962410	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1983400	0.97[ASN][1000 genomes]
rs2176998	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2306083	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2412572	0.81[EUR][1000 genomes]
rs2412601	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28409432	0.86[ASN][1000 genomes]
rs28455998	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28479904	0.83[EUR][1000 genomes]
rs28501589	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28510775	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28516683	0.86[ASN][1000 genomes]
rs28581803	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28613002	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28688742	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28729675	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28866311	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2925342	0.86[EUR][1000 genomes]
rs2925345	0.84[EUR][1000 genomes]
rs2925346	0.87[EUR][1000 genomes]
rs2927061	0.86[EUR][1000 genomes]
rs2927062	0.86[EUR][1000 genomes]
rs2928148	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2928156	0.86[ASN][1000 genomes]
rs2947493	0.97[ASN][1000 genomes]
rs2947494	0.97[ASN][1000 genomes]
rs3100807	0.86[EUR][1000 genomes]
rs3101436	0.85[EUR][1000 genomes]
rs3101442	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3214068	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36046988	0.85[ASN][1000 genomes]
rs3986311	0.82[EUR][1000 genomes]
rs4497658	0.81[EUR][1000 genomes]
rs4592624	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs476633	0.97[ASN][1000 genomes]
rs516156	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs544744	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs561301	0.86[ASN][1000 genomes]
rs57393155	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61203391	0.84[ASN][1000 genomes]
rs6492983	0.86[ASN][1000 genomes]
rs66818965	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs691672	0.85[ASN][1000 genomes]
rs691830	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs692153	0.86[ASN][1000 genomes]
rs692155	0.88[EUR][1000 genomes]
rs692195	0.86[ASN][1000 genomes]
rs7162992	0.87[EUR][1000 genomes]
rs7169375	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7173841	0.86[ASN][1000 genomes]
rs7179681	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7180853	0.86[ASN][1000 genomes]
rs7181816	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737704	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8023345	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8027932	0.86[ASN][1000 genomes]
rs8033435	0.86[ASN][1000 genomes]
rs8037837	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8042088	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9888710	0.86[ASN][1000 genomes]
rs9888718	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41328800-41388600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:41334600-41389000	Strong transcription	Primary T helper cells PMA-I stimulated	--
3	chr15:41335400-41358800	Strong transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:41336800-41380400	Strong transcription	Osteobl	bone
5	chr15:41340800-41366800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:41341600-41360400	Weak transcription	Stomach Mucosa	stomach
7	chr15:41341600-41389000	Strong transcription	Liver	Liver
8	chr15:41345200-41373600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:41346000-41358000	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr15:41346800-41368600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:41347000-41380200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr15:41348400-41363400	Strong transcription	Brain Germinal Matrix	brain
13	chr15:41349400-41362400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:41349400-41365200	Weak transcription	Fetal Heart	heart
15	chr15:41351200-41363800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr15:41352400-41358000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:41352400-41358200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:41352600-41360400	Weak transcription	Brain Angular Gyrus	brain
19	chr15:41353800-41358400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:41354000-41368600	Strong transcription	NH-A	brain
21	chr15:41354200-41389200	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:41354600-41358200	Strong transcription	Brain Substantia Nigra	brain
23	chr15:41354600-41359000	Strong transcription	Gastric	stomach
24	chr15:41354600-41367400	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr15:41354600-41388800	Strong transcription	Fetal Intestine Large	intestine
26	chr15:41354600-41389000	Strong transcription	Duodenum Mucosa	Duodenum
27	chr15:41354800-41388600	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr15:41354800-41389200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:41355000-41357800	Weak transcription	Brain Hippocampus Middle	brain
30	chr15:41355000-41358000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr15:41355000-41358000	Weak transcription	Aorta	Aorta
32	chr15:41355000-41358600	Weak transcription	HUVEC	blood vessel
33	chr15:41355000-41359000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:41355000-41361600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:41355000-41361600	Weak transcription	HMEC	breast
36	chr15:41355000-41362000	Strong transcription	Fetal Intestine Small	intestine
37	chr15:41355000-41363400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:41355000-41364400	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr15:41355000-41364400	Strong transcription	Left Ventricle	heart
40	chr15:41355000-41367200	Strong transcription	Ovary	ovary
41	chr15:41355000-41367400	Strong transcription	Adipose Nuclei	Adipose
42	chr15:41355000-41369200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr15:41355000-41370800	Strong transcription	Primary B cells from peripheral blood	blood
44	chr15:41355000-41374200	Strong transcription	Hela-S3	cervix
45	chr15:41355000-41380200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:41355000-41380800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:41355000-41381000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr15:41355000-41388400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr15:41355000-41389400	Strong transcription	Placenta	Placenta
50	chr15:41355000-41392000	Strong transcription	Fetal Thymus	thymus

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