Variant report

Variant	rs7181816
Chromosome Location	chr15:41358720-41358721
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41352417..41354404-chr15:41357276..41359773,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1009913	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11853192	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11854472	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855248	0.83[EUR][1000 genomes]
rs11855797	0.85[ASN][1000 genomes]
rs11856572	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11856577	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11856848	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12101934	0.84[ASN][1000 genomes]
rs12899590	0.82[EUR][1000 genomes]
rs12905926	0.84[EUR][1000 genomes]
rs12910027	0.84[EUR][1000 genomes]
rs1678750	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1717200	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1962410	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1983400	0.97[ASN][1000 genomes]
rs2176998	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2306083	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2412572	0.81[EUR][1000 genomes]
rs2412601	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28409432	0.86[ASN][1000 genomes]
rs28455998	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28479904	0.83[EUR][1000 genomes]
rs28501589	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28510775	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28516683	0.86[ASN][1000 genomes]
rs28581803	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28613002	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28688742	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28729675	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28866311	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2925342	0.86[EUR][1000 genomes]
rs2925345	0.84[EUR][1000 genomes]
rs2925346	0.87[EUR][1000 genomes]
rs2927061	0.86[EUR][1000 genomes]
rs2927062	0.86[EUR][1000 genomes]
rs2928148	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2928156	0.86[ASN][1000 genomes]
rs2947493	0.97[ASN][1000 genomes]
rs2947494	0.97[ASN][1000 genomes]
rs3100807	0.86[EUR][1000 genomes]
rs3101436	0.85[EUR][1000 genomes]
rs3101442	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3214068	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36046988	0.85[ASN][1000 genomes]
rs3986311	0.82[EUR][1000 genomes]
rs4497658	0.81[EUR][1000 genomes]
rs4592624	0.97[ASN][1000 genomes]
rs476633	0.97[ASN][1000 genomes]
rs516156	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs544744	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs561301	0.86[ASN][1000 genomes]
rs57393155	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61203391	0.84[ASN][1000 genomes]
rs6492983	0.86[ASN][1000 genomes]
rs66818965	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs691672	0.85[ASN][1000 genomes]
rs691830	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs692153	0.86[ASN][1000 genomes]
rs692155	0.88[EUR][1000 genomes]
rs692195	0.86[ASN][1000 genomes]
rs7162992	0.87[EUR][1000 genomes]
rs7169375	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7173841	0.86[ASN][1000 genomes]
rs7179681	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7180853	0.86[ASN][1000 genomes]
rs72737704	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8023345	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8027932	0.86[ASN][1000 genomes]
rs8033435	0.86[ASN][1000 genomes]
rs8037837	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8042088	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9888710	0.86[ASN][1000 genomes]
rs9888718	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41328800-41388600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:41334600-41389000	Strong transcription	Primary T helper cells PMA-I stimulated	--
3	chr15:41335400-41358800	Strong transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:41336800-41380400	Strong transcription	Osteobl	bone
5	chr15:41340800-41366800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:41341600-41360400	Weak transcription	Stomach Mucosa	stomach
7	chr15:41341600-41389000	Strong transcription	Liver	Liver
8	chr15:41345200-41373600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:41346800-41368600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:41347000-41380200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr15:41348400-41363400	Strong transcription	Brain Germinal Matrix	brain
12	chr15:41349400-41362400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:41349400-41365200	Weak transcription	Fetal Heart	heart
14	chr15:41351200-41363800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:41352600-41360400	Weak transcription	Brain Angular Gyrus	brain
16	chr15:41354000-41368600	Strong transcription	NH-A	brain
17	chr15:41354200-41389200	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:41354600-41359000	Strong transcription	Gastric	stomach
19	chr15:41354600-41367400	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr15:41354600-41388800	Strong transcription	Fetal Intestine Large	intestine
21	chr15:41354600-41389000	Strong transcription	Duodenum Mucosa	Duodenum
22	chr15:41354800-41388600	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr15:41354800-41389200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:41355000-41359000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:41355000-41361600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:41355000-41361600	Weak transcription	HMEC	breast
27	chr15:41355000-41362000	Strong transcription	Fetal Intestine Small	intestine
28	chr15:41355000-41363400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:41355000-41364400	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:41355000-41364400	Strong transcription	Left Ventricle	heart
31	chr15:41355000-41367200	Strong transcription	Ovary	ovary
32	chr15:41355000-41367400	Strong transcription	Adipose Nuclei	Adipose
33	chr15:41355000-41369200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr15:41355000-41370800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr15:41355000-41374200	Strong transcription	Hela-S3	cervix
36	chr15:41355000-41380200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:41355000-41380800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:41355000-41381000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:41355000-41388400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr15:41355000-41389400	Strong transcription	Placenta	Placenta
41	chr15:41355000-41392000	Strong transcription	Fetal Thymus	thymus
42	chr15:41355000-41392400	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr15:41355000-41393800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:41355200-41359400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:41355200-41367200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr15:41355200-41370600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:41355200-41388600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr15:41355200-41388800	Strong transcription	Primary T cells from cord blood	blood
49	chr15:41355400-41358800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr15:41355400-41360200	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links