Variant report

Variant	rs11854637
Chromosome Location	chr15:29970186-29970187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:29963308..29966325-chr15:29969891..29973216,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16955658	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16955661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4522365	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv903747	chr15:29361126-30008977	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv832944	chr15:29861062-30082057	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv832945	chr15:29932599-30123721	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29967200-29971400	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr15:29967800-29970200	Weak transcription	Right Atrium	heart
3	chr15:29967800-29970400	Weak transcription	Brain Substantia Nigra	brain
4	chr15:29968000-29970400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:29968000-29970600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:29968000-29971000	Transcr. at gene 5' and 3'	A549	lung
7	chr15:29968000-29977400	Weak transcription	NHLF	lung
8	chr15:29968200-29970200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:29968200-29970200	Weak transcription	Fetal Heart	heart
10	chr15:29968200-29970200	Weak transcription	Spleen	Spleen
11	chr15:29968200-29970600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr15:29968200-29974200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:29968400-29970200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:29968400-29970600	Enhancers	Gastric	stomach
15	chr15:29968400-29973000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:29968600-29972000	Enhancers	Fetal Intestine Large	intestine
17	chr15:29968600-29978800	Weak transcription	Liver	Liver
18	chr15:29968800-29970600	Enhancers	HUVEC	blood vessel
19	chr15:29969000-29970200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr15:29969000-29970400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr15:29969000-29970400	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chr15:29969200-29970400	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr15:29969200-29970600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr15:29969200-29971200	Genic enhancers	Fetal Intestine Small	intestine
25	chr15:29969200-29992000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr15:29969400-29970400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr15:29969400-29973000	Weak transcription	Fetal Lung	lung
28	chr15:29969600-29970200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr15:29969600-29970200	Weak transcription	Brain Hippocampus Middle	brain
30	chr15:29969600-29970200	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr15:29969600-29970400	Enhancers	Brain Angular Gyrus	brain
32	chr15:29969600-29971400	Enhancers	Stomach Mucosa	stomach
33	chr15:29969600-29972200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:29969600-29972800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr15:29969600-29975000	Weak transcription	Brain Germinal Matrix	brain
36	chr15:29969600-29975000	Weak transcription	Fetal Stomach	stomach
37	chr15:29969600-29977400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:29969800-29970400	Enhancers	Lung	lung
39	chr15:29969800-29970600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:29969800-29970600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
41	chr15:29969800-29971400	Enhancers	Colonic Mucosa	Colon
42	chr15:29969800-29975000	Weak transcription	NH-A	brain
43	chr15:29970000-29970200	Enhancers	Pancreas	Pancrea
44	chr15:29970000-29970400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr15:29970000-29970600	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:29970000-29970800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:29970000-29971400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr15:29970000-29972600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr15:29970000-29975000	Weak transcription	Osteobl	bone
50	chr15:29970000-29975400	Weak transcription	HSMM	muscle

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