Variant report

Variant	rs11854731
Chromosome Location	chr15:57994921-57994922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11854253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11858659	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16977648	0.87[CEU][hapmap];0.95[EUR][1000 genomes]
rs28421709	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7181032	0.87[CEU][hapmap]
rs7181215	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs7182316	0.88[CEU][hapmap]
rs72745565	0.81[EUR][1000 genomes]
rs72745568	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745576	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745583	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72747204	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8034567	0.87[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57979200-57998200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:57983600-57998200	Weak transcription	Adipose Nuclei	Adipose
3	chr15:57983800-57998400	Weak transcription	Right Ventricle	heart
4	chr15:57987400-57998200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:57987800-57995800	Weak transcription	Fetal Heart	heart
6	chr15:57989400-57995400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:57989600-57998200	Weak transcription	Left Ventricle	heart
8	chr15:57990200-57998400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:57994600-57996400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:57994800-57995000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr15:57994800-57996200	Enhancers	Hela-S3	cervix
12	chr15:57994800-57996200	Enhancers	HMEC	breast
13	chr15:57994800-57998000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr15:57994800-57998200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:57994800-57998200	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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