Variant report

Variant	rs72745568
Chromosome Location	chr15:57984780-57984781
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57984558..57987320-chr15:57997268..57999048,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CGNL1-1	chr15:57982562-57984896	ENSG00000261699.1

Variant related genes	Relation type
ENSG00000255529	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11854253	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854731	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857147	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11858659	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16977648	0.84[EUR][1000 genomes]
rs28421709	0.88[EUR][1000 genomes]
rs72745565	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72745576	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745583	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745586	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745594	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72747204	0.84[EUR][1000 genomes]
rs8034567	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57960800-57985000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:57975600-57986600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:57975800-57986400	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:57977200-57984800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:57978400-57985000	Weak transcription	Fetal Intestine Large	intestine
6	chr15:57979200-57986200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:57979200-57998200	Weak transcription	Fetal Intestine Small	intestine
8	chr15:57982600-57984800	Enhancers	Pancreas	Pancrea
9	chr15:57982600-57984800	Enhancers	Right Atrium	heart
10	chr15:57982600-57986200	Enhancers	Hela-S3	cervix
11	chr15:57983200-57989400	Weak transcription	Lung	lung
12	chr15:57983400-57989000	Weak transcription	Aorta	Aorta
13	chr15:57983600-57984800	Enhancers	Gastric	stomach
14	chr15:57983600-57987800	Enhancers	Fetal Heart	heart
15	chr15:57983600-57998200	Weak transcription	Adipose Nuclei	Adipose
16	chr15:57983800-57986000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr15:57983800-57998400	Weak transcription	Right Ventricle	heart
18	chr15:57984400-57984800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:57984400-57985000	Enhancers	HMEC	breast
20	chr15:57984400-57985000	Enhancers	HUVEC	blood vessel
21	chr15:57984600-57984800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr15:57984600-57984800	Enhancers	Fetal Muscle Leg	muscle
23	chr15:57984600-57984800	Enhancers	Fetal Stomach	stomach
24	chr15:57984600-57984800	Genic enhancers	Left Ventricle	heart
25	chr15:57984600-57984800	Enhancers	Ovary	ovary
26	chr15:57984600-57985400	Enhancers	Fetal Lung	lung
27	chr15:57984600-57986000	Weak transcription	Fetal Kidney	kidney
28	chr15:57984600-57986400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr15:57984600-57988000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:57984600-57988200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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