Variant report

Variant	rs11854747
Chromosome Location	chr15:57860832-57860833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28557258	0.84[EUR][1000 genomes]
rs2932200	1.00[ASN][1000 genomes]
rs4774271	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57846800-57861400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:57854800-57862800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:57854800-57869800	Weak transcription	Lung	lung
4	chr15:57855800-57862800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:57857400-57863400	Enhancers	Hela-S3	cervix
6	chr15:57857800-57862400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:57857800-57863200	Weak transcription	HSMM	muscle
8	chr15:57858000-57862600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:57858200-57862600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:57858200-57862600	Weak transcription	HMEC	breast
11	chr15:57858200-57870800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:57858600-57861000	Enhancers	Fetal Heart	heart
13	chr15:57859200-57861000	Enhancers	Ovary	ovary
14	chr15:57859400-57862600	Weak transcription	NHEK	skin
15	chr15:57859600-57863400	Weak transcription	A549	lung
16	chr15:57859600-57864400	Weak transcription	NHDF-Ad	bronchial
17	chr15:57859800-57863000	Weak transcription	HUVEC	blood vessel
18	chr15:57859800-57865000	Weak transcription	Right Atrium	heart
19	chr15:57859800-57866200	Weak transcription	Right Ventricle	heart
20	chr15:57859800-57869600	Weak transcription	Adipose Nuclei	Adipose
21	chr15:57859800-57869800	Weak transcription	Fetal Intestine Large	intestine
22	chr15:57860000-57861000	Enhancers	Fetal Kidney	kidney
23	chr15:57860000-57861600	Enhancers	Primary B cells from cord blood	blood
24	chr15:57860200-57863000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr15:57860800-57865200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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