Variant report

Variant	rs28557258
Chromosome Location	chr15:57878039-57878040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1009319	1.00[ASN][1000 genomes]
rs10152310	1.00[ASN][1000 genomes]
rs10152878	1.00[ASN][1000 genomes]
rs10851618	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10851619	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11071335	1.00[ASN][1000 genomes]
rs11852838	1.00[ASN][1000 genomes]
rs11853270	1.00[ASN][1000 genomes]
rs11854747	0.84[EUR][1000 genomes]
rs11856824	1.00[ASN][1000 genomes]
rs12323998	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12324010	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324289	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12324526	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442978	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12442987	1.00[ASN][1000 genomes]
rs12443389	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12443485	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13380406	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13380418	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1346125	1.00[ASN][1000 genomes]
rs17239937	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17820515	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2172608	1.00[ASN][1000 genomes]
rs4774271	0.80[EUR][1000 genomes]
rs4774273	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4774274	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4774281	1.00[ASN][1000 genomes]
rs4774282	1.00[ASN][1000 genomes]
rs4774971	1.00[ASN][1000 genomes]
rs4774974	1.00[ASN][1000 genomes]
rs57589057	1.00[ASN][1000 genomes]
rs58017146	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58919063	1.00[ASN][1000 genomes]
rs61600143	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7178159	1.00[ASN][1000 genomes]
rs72743512	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72743516	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72745565	1.00[ASN][1000 genomes]
rs7359330	1.00[ASN][1000 genomes]
rs74016366	1.00[ASN][1000 genomes]
rs9796502	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57874600-57882000	Weak transcription	Pancreas	Pancrea
2	chr15:57875000-57878400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr15:57875600-57879400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:57877400-57883600	Enhancers	Primary B cells from peripheral blood	blood
5	chr15:57877600-57878800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:57877600-57882400	Enhancers	Primary B cells from cord blood	blood
7	chr15:57877800-57880000	Weak transcription	Right Atrium	heart
8	chr15:57878000-57878600	Weak transcription	Right Ventricle	heart
9	chr15:57878000-57880200	Weak transcription	Left Ventricle	heart
10	chr15:57878000-57880600	Weak transcription	Fetal Heart	heart
11	chr15:57878000-57881800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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