Variant report

Variant	rs10851619
Chromosome Location	chr15:57890380-57890381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr15:57890369-57890405	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57884863..57887415-chr15:57888908..57890684,2	MCF-7	breast:

Variant related genes	Relation type
MYZAP	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1009319	1.00[ASN][1000 genomes]
rs10152310	1.00[ASN][1000 genomes]
rs10152878	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10851618	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11071335	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852838	1.00[ASN][1000 genomes]
rs11853270	1.00[ASN][1000 genomes]
rs11856824	1.00[ASN][1000 genomes]
rs12323998	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324010	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12324289	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324526	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12442978	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12442987	1.00[ASN][1000 genomes]
rs12443389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12443485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13380406	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13380418	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1346125	1.00[ASN][1000 genomes]
rs17239937	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17820515	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172608	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28557258	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4774273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774281	1.00[ASN][1000 genomes]
rs4774282	1.00[ASN][1000 genomes]
rs4774971	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774974	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57589057	1.00[ASN][1000 genomes]
rs58017146	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58919063	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61600143	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178159	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743512	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743516	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745565	1.00[ASN][1000 genomes]
rs7359330	1.00[ASN][1000 genomes]
rs74016366	1.00[ASN][1000 genomes]
rs9796502	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57885200-57891600	Enhancers	Fetal Intestine Large	intestine
2	chr15:57885200-57899000	Weak transcription	Hela-S3	cervix
3	chr15:57885200-57899400	Weak transcription	HUVEC	blood vessel
4	chr15:57885200-57899800	Weak transcription	Placenta	Placenta
5	chr15:57885400-57891000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr15:57885400-57894600	Enhancers	Pancreas	Pancrea
7	chr15:57885600-57891400	Enhancers	Stomach Mucosa	stomach
8	chr15:57886000-57892000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr15:57886600-57896600	Enhancers	Adipose Nuclei	Adipose
10	chr15:57886800-57891600	Enhancers	Duodenum Mucosa	Duodenum
11	chr15:57886800-57891800	Enhancers	Colon Smooth Muscle	Colon
12	chr15:57887000-57890400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr15:57887200-57891000	Enhancers	Right Atrium	heart
14	chr15:57887800-57899200	Weak transcription	Colonic Mucosa	Colon
15	chr15:57887800-57899200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:57888000-57890600	Enhancers	Spleen	Spleen
17	chr15:57888000-57891000	Enhancers	Right Ventricle	heart
18	chr15:57888200-57890800	Weak transcription	Psoas Muscle	Psoas
19	chr15:57888200-57890800	Weak transcription	Small Intestine	intestine
20	chr15:57888200-57891600	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:57888600-57893800	Weak transcription	Thymus	Thymus
22	chr15:57889000-57891600	Enhancers	Left Ventricle	heart
23	chr15:57889600-57892600	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr15:57889800-57890400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr15:57889800-57891600	Enhancers	Fetal Intestine Small	intestine
26	chr15:57889800-57891600	Weak transcription	Gastric	stomach
27	chr15:57889800-57891600	Enhancers	Stomach Smooth Muscle	stomach
28	chr15:57889800-57892600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr15:57889800-57895600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:57890000-57890600	Active TSS	Esophagus	oesophagus
31	chr15:57890000-57891200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:57890000-57892000	Flanking Active TSS	Fetal Heart	heart
33	chr15:57890000-57899000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:57890000-57899400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:57890000-57902400	Weak transcription	Ovary	ovary
36	chr15:57890200-57891600	Weak transcription	Lung	lung
37	chr15:57890200-57904200	Weak transcription	Fetal Stomach	stomach
38	chr15:57890200-57904400	Weak transcription	Fetal Lung	lung

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