Variant report

Variant	rs4774974
Chromosome Location	chr15:57907689-57907690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57885653..57889310-chr15:57906324..57909030,3	MCF-7	breast:
2	chr15:57905952..57909167-chr15:57910237..57913863,4	K562	blood:
3	chr15:57851732..57852476-chr15:57907542..57908393,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1009319	1.00[ASN][1000 genomes]
rs10152310	1.00[ASN][1000 genomes]
rs10152878	1.00[ASN][1000 genomes]
rs10851618	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10851619	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11071335	1.00[ASN][1000 genomes]
rs11852838	1.00[ASN][1000 genomes]
rs11853270	1.00[ASN][1000 genomes]
rs11856824	1.00[ASN][1000 genomes]
rs12323998	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324010	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324289	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324526	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442978	1.00[ASN][1000 genomes]
rs12442987	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12443389	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12443485	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13380406	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13380418	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1346125	1.00[ASN][1000 genomes]
rs17239937	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17820515	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172608	1.00[ASN][1000 genomes]
rs28557258	1.00[ASN][1000 genomes]
rs4774273	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774274	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774281	1.00[ASN][1000 genomes]
rs4774282	1.00[ASN][1000 genomes]
rs4774971	1.00[ASN][1000 genomes]
rs57589057	1.00[ASN][1000 genomes]
rs58017146	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58919063	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61600143	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178159	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743512	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743516	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745565	1.00[ASN][1000 genomes]
rs7359330	1.00[ASN][1000 genomes]
rs74016366	1.00[ASN][1000 genomes]
rs9796502	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57892000-57908800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:57894400-57938200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr15:57897000-57909200	Weak transcription	Psoas Muscle	Psoas
4	chr15:57900600-57911800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:57900600-57941600	Weak transcription	Colonic Mucosa	Colon
6	chr15:57901800-57912000	Weak transcription	Spleen	Spleen
7	chr15:57902600-57907800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:57903000-57907800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:57904400-57935200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:57904600-57910600	Weak transcription	Gastric	stomach
11	chr15:57904600-57914800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:57904600-57918000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:57904600-57919000	Weak transcription	Fetal Lung	lung
14	chr15:57904600-57919000	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:57904600-57919200	Weak transcription	Ovary	ovary
16	chr15:57904600-57921600	Weak transcription	Fetal Stomach	stomach
17	chr15:57904600-57936400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:57904800-57910000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr15:57904800-57910800	Weak transcription	HUVEC	blood vessel
20	chr15:57904800-57919000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:57904800-57919000	Weak transcription	Fetal Kidney	kidney
22	chr15:57905000-57910000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr15:57905000-57912000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:57905000-57912200	Weak transcription	Hela-S3	cervix
25	chr15:57905000-57917600	Weak transcription	Colon Smooth Muscle	Colon
26	chr15:57905000-57940800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:57905600-57908200	Enhancers	Fetal Intestine Large	intestine
28	chr15:57906200-57908000	Genic enhancers	Fetal Intestine Small	intestine
29	chr15:57906200-57909800	Enhancers	Fetal Heart	heart
30	chr15:57906400-57907800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:57906400-57907800	Enhancers	Lung	lung
32	chr15:57906400-57907800	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr15:57906400-57908000	Enhancers	Right Ventricle	heart
34	chr15:57906400-57908200	Genic enhancers	Left Ventricle	heart
35	chr15:57906400-57908200	Enhancers	Right Atrium	heart
36	chr15:57906800-57908200	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr15:57906800-57911600	Weak transcription	Pancreas	Pancrea
38	chr15:57906800-57911800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr15:57907200-57907800	Enhancers	Fetal Muscle Trunk	muscle
40	chr15:57907200-57908600	Enhancers	Adipose Nuclei	Adipose
41	chr15:57907600-57907800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr15:57907600-57908000	Enhancers	H1 Cell Line	embryonic stem cell
43	chr15:57907600-57908000	Enhancers	Stomach Mucosa	stomach
44	chr15:57907600-57908200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr15:57907600-57908200	Enhancers	Esophagus	oesophagus
46	chr15:57907600-57908200	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr15:57907600-57908400	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr15:57907600-57908400	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr15:57907600-57908400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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