Variant report

Variant	rs11855078
Chromosome Location	chr15:93210753-93210754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11074093	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11074094	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11852714	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440553	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12909879	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1532430	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35156457	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs405737	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs436015	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11855078	FAM174B	cis	Esophagus Muscularis	GTEx
rs11855078	LOC400451	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93207200-93211800	Enhancers	Fetal Muscle Trunk	muscle
2	chr15:93207200-93213000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:93207600-93211200	Enhancers	Pancreas	Pancrea
4	chr15:93207600-93211800	Enhancers	Fetal Muscle Leg	muscle
5	chr15:93207800-93211800	Enhancers	Liver	Liver
6	chr15:93207800-93211800	Enhancers	Fetal Stomach	stomach
7	chr15:93208200-93211800	Enhancers	Fetal Heart	heart
8	chr15:93208200-93212000	Enhancers	Fetal Intestine Small	intestine
9	chr15:93208400-93210800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr15:93208400-93212000	Enhancers	Fetal Kidney	kidney
11	chr15:93208800-93211000	Enhancers	Adipose Nuclei	Adipose
12	chr15:93208800-93211600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr15:93209000-93210800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:93209000-93211200	Enhancers	GM12878-XiMat	blood
15	chr15:93209000-93211600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr15:93209200-93211200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr15:93209200-93211600	Enhancers	Placenta	Placenta
18	chr15:93209400-93211600	Enhancers	Fetal Intestine Large	intestine
19	chr15:93209400-93211800	Enhancers	Left Ventricle	heart
20	chr15:93209400-93211800	Enhancers	Right Atrium	heart
21	chr15:93209400-93212000	Enhancers	Ovary	ovary
22	chr15:93209600-93210800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:93209600-93211000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:93209600-93211800	Enhancers	Right Ventricle	heart
25	chr15:93209800-93210800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr15:93210000-93210800	Enhancers	Esophagus	oesophagus
27	chr15:93210000-93211200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr15:93210000-93211200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:93210000-93211200	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr15:93210000-93211200	Flanking Active TSS	A549	lung
31	chr15:93210000-93211600	Enhancers	Psoas Muscle	Psoas
32	chr15:93210000-93211800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr15:93210000-93211800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr15:93210000-93211800	Enhancers	Lung	lung
35	chr15:93210000-93212000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr15:93210200-93211000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr15:93210200-93211000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr15:93210200-93211000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr15:93210200-93211000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:93210200-93211200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
41	chr15:93210200-93211200	Enhancers	Muscle Satellite Cultured Cells	--
42	chr15:93210200-93211600	Enhancers	Fetal Thymus	thymus
43	chr15:93210200-93211800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:93210200-93211800	Enhancers	Gastric	stomach
45	chr15:93210400-93210800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
46	chr15:93210400-93210800	Enhancers	HSMMtube	muscle
47	chr15:93210400-93211000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:93210400-93211000	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr15:93210400-93211000	Flanking Active TSS	HepG2	liver
50	chr15:93210400-93211000	Enhancers	HUVEC	blood vessel

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