Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53516800..53518385-chr15:53519039..53521500,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10163134	0.81[AFR][1000 genomes]
rs10851535	0.88[AFR][1000 genomes]
rs11632242	0.87[AFR][1000 genomes]
rs11632644	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11633541	0.81[AFR][1000 genomes]
rs11857258	0.87[AFR][1000 genomes]
rs12593169	0.88[AFR][1000 genomes]
rs12901316	0.88[AFR][1000 genomes]
rs12908835	0.87[AFR][1000 genomes]
rs1356861	0.88[AFR][1000 genomes]
rs1911687	0.87[AFR][1000 genomes]
rs2661577	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4545759	0.81[AFR][1000 genomes]
rs4551981	0.81[AFR][1000 genomes]
rs4577024	0.81[AFR][1000 genomes]
rs6493617	0.88[AFR][1000 genomes]
rs7167895	0.88[AFR][1000 genomes]
rs7170453	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7171938	0.88[AFR][1000 genomes]
rs7172105	0.88[AFR][1000 genomes]
rs8027357	0.87[AFR][1000 genomes]
rs8027387	0.87[AFR][1000 genomes]
rs8027674	0.87[AFR][1000 genomes]
rs8042542	0.88[AFR][1000 genomes]
rs8043044	0.87[AFR][1000 genomes]
rs931916	0.86[AFR][1000 genomes]
rs931917	0.81[AFR][1000 genomes]
rs931918	0.87[AFR][1000 genomes]
rs931919	0.87[AFR][1000 genomes]
rs9920052	0.84[AFR][1000 genomes]
rs9920819	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1051634	chr15:53459129-53565627	Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3385784	chr15:53492461-53521900	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53512200-53519800	Weak transcription	HepG2	liver
2	chr15:53518000-53519800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: