Variant report

Variant	rs11857190
Chromosome Location	chr15:32997667-32997668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11071897	1.00[JPT][hapmap]
rs11071922	0.82[EUR][1000 genomes]
rs11638007	0.87[ASN][1000 genomes]
rs11853552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857997	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1258714	1.00[JPT][hapmap]
rs12591992	0.81[EUR][1000 genomes]
rs12901827	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12902616	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12906413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915554	0.85[YRI][hapmap]
rs1406388	1.00[JPT][hapmap]
rs1534594	0.87[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1554868	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17816236	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1997316	1.00[JPT][hapmap]
rs28650777	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28663519	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4779583	1.00[JPT][hapmap]
rs55659128	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6494577	1.00[JPT][hapmap]
rs6494593	1.00[JPT][hapmap]
rs6494598	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7497115	1.00[JPT][hapmap]
rs7497354	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv456787	chr15:32968923-33023951	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv568916	chr15:32968923-33023951	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:32985000-33002000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:32987200-32998800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:32994000-32998600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:32994000-32999200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:32994000-33001200	Weak transcription	Stomach Mucosa	stomach
6	chr15:32995800-32999000	Weak transcription	HepG2	liver
7	chr15:32996200-32999400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:32996200-32999600	Enhancers	HSMM	muscle
9	chr15:32996200-32999600	Enhancers	HSMMtube	muscle
10	chr15:32996200-33000000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:32996400-32999400	Enhancers	NHLF	lung
12	chr15:32996400-32999600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:32996400-32999800	Enhancers	NH-A	brain
14	chr15:32996400-33000400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:32996600-32999800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:32996800-32998200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:32996800-32999400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:32996800-32999400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:32997000-32999600	Enhancers	NHEK	skin
20	chr15:32997000-32999800	Enhancers	HMEC	breast
21	chr15:32997000-32999800	Enhancers	Osteobl	bone
22	chr15:32997000-33001200	Weak transcription	Colon Smooth Muscle	Colon
23	chr15:32997200-32998800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:32997400-32998000	Flanking Active TSS	NHDF-Ad	bronchial
25	chr15:32997400-32998600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr15:32997400-33000600	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr15:32997600-33000400	Enhancers	Muscle Satellite Cultured Cells	--

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