Variant report

Variant	rs11857313
Chromosome Location	chr15:92975271-92975272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92972402..92975668-chr15:92976149..92978745,3	K562	blood:
2	chr15:92972936..92975707-chr15:92981597..92984100,2	K562	blood:
3	chr15:92972965..92975668-chr15:92976149..92977937,2	K562	blood:

Variant related genes	Relation type
ENSG00000140557	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs166956	1.00[JPT][hapmap]
rs16946889	1.00[ASN][1000 genomes]
rs17521544	1.00[ASN][1000 genomes]
rs17599828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17599870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17600009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs206349	1.00[JPT][hapmap]
rs285703	1.00[JPT][hapmap]
rs285706	1.00[JPT][hapmap]
rs285708	1.00[JPT][hapmap]
rs285709	1.00[JPT][hapmap]
rs285715	1.00[JPT][hapmap]
rs400225	1.00[JPT][hapmap]
rs409943	1.00[JPT][hapmap]
rs417297	1.00[JPT][hapmap]
rs418340	1.00[JPT][hapmap]
rs441604	1.00[JPT][hapmap]
rs452555	1.00[JPT][hapmap]
rs453916	1.00[JPT][hapmap]
rs60704830	1.00[ASN][1000 genomes]
rs6496959	1.00[JPT][hapmap]
rs7166312	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7176571	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7176692	1.00[ASN][1000 genomes]
rs7181934	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92953400-92997800	Weak transcription	Fetal Brain Male	brain
2	chr15:92957200-93006400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:92962400-92977400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:92969000-92975400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:92972000-93011800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:92972800-93011400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:92973200-92983800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:92973400-92980800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:92973400-92982600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:92973400-92991000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:92973400-93012200	Strong transcription	Brain Germinal Matrix	brain
12	chr15:92973600-92982800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:92973600-92995000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:92973600-93006200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:92973600-93008800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:92973600-93011400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr15:92973800-92976200	Strong transcription	Fetal Muscle Leg	muscle
18	chr15:92973800-93003800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:92974000-92975400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:92974000-92982600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:92974000-92990600	Weak transcription	NHDF-Ad	bronchial
22	chr15:92974200-92980200	Strong transcription	HSMMtube	muscle
23	chr15:92974200-92981200	Weak transcription	NH-A	brain
24	chr15:92974200-92998000	Strong transcription	Fetal Brain Female	brain
25	chr15:92974800-92976000	Strong transcription	HSMM	muscle
26	chr15:92975000-92975800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:92975000-92975800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:92975200-92975400	Strong transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links