Variant report

Variant	rs17599828
Chromosome Location	chr15:92953990-92953991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11857313	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946889	1.00[ASN][1000 genomes]
rs17521544	1.00[ASN][1000 genomes]
rs17599870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17600009	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60704830	1.00[ASN][1000 genomes]
rs7166312	1.00[ASN][1000 genomes]
rs7176571	1.00[ASN][1000 genomes]
rs7176692	1.00[ASN][1000 genomes]
rs7181934	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92939600-92956600	Weak transcription	Right Atrium	heart
2	chr15:92942800-92958000	Weak transcription	Left Ventricle	heart
3	chr15:92945000-92955200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:92947600-92954400	Weak transcription	HSMM	muscle
5	chr15:92950000-92957200	Weak transcription	Fetal Stomach	stomach
6	chr15:92950600-92954000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:92950800-92954000	Weak transcription	Fetal Heart	heart
8	chr15:92951000-92954000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr15:92951600-92956600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:92951600-92957600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:92952400-92955200	Enhancers	HSMMtube	muscle
12	chr15:92952600-92956600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:92953000-92954200	Enhancers	Fetal Muscle Leg	muscle
14	chr15:92953200-92956600	Weak transcription	Fetal Brain Female	brain
15	chr15:92953200-92956800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:92953200-92962200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:92953200-92963600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:92953200-92969000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:92953400-92955600	Weak transcription	Brain Germinal Matrix	brain
20	chr15:92953400-92997800	Weak transcription	Fetal Brain Male	brain
21	chr15:92953600-92954200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:92953600-92956400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:92953800-92955600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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