Variant report

Variant	rs11857636
Chromosome Location	chr15:75467454-75467455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75463144..75468102-chr15:75468873..75472339,5	K562	blood:
2	chr15:75466784..75471130-chr15:75492777..75496350,7	MCF-7	breast:
3	chr15:75340729..75343643-chr15:75466127..75468118,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction
ENSG00000138621	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12904018	0.86[EUR][1000 genomes]
rs2415155	0.91[AMR][1000 genomes]
rs4886674	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4886675	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7163523	0.86[EUR][1000 genomes]
rs73437050	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75454200-75470000	Weak transcription	Thymus	Thymus
2	chr15:75462600-75469000	Enhancers	Hela-S3	cervix
3	chr15:75463000-75470600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:75463200-75470000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr15:75463400-75469000	Weak transcription	Gastric	stomach
6	chr15:75463600-75469800	Weak transcription	Small Intestine	intestine
7	chr15:75463600-75471000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:75464000-75467800	Weak transcription	NHDF-Ad	bronchial
9	chr15:75464000-75468800	Weak transcription	Pancreas	Pancrea
10	chr15:75464000-75470200	Weak transcription	Left Ventricle	heart
11	chr15:75464200-75467600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:75464200-75467800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:75464200-75467800	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr15:75464200-75468800	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:75464400-75467800	Weak transcription	Osteobl	bone
16	chr15:75464400-75470400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:75464400-75470600	Weak transcription	HUVEC	blood vessel
18	chr15:75464800-75467800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:75464800-75469000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:75464800-75469200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr15:75464800-75469800	Weak transcription	NHLF	lung
22	chr15:75464800-75470000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr15:75464800-75470400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:75465000-75467800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:75465000-75468000	Weak transcription	K562	blood
26	chr15:75465000-75468600	Weak transcription	Lung	lung
27	chr15:75465000-75468600	Weak transcription	Right Atrium	heart
28	chr15:75465000-75468800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:75465000-75469000	Weak transcription	Spleen	Spleen
30	chr15:75465000-75469400	Weak transcription	Fetal Thymus	thymus
31	chr15:75465000-75469800	Weak transcription	Fetal Heart	heart
32	chr15:75465200-75467800	Weak transcription	NH-A	brain
33	chr15:75465400-75467800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr15:75465400-75468000	Weak transcription	GM12878-XiMat	blood
35	chr15:75465600-75467800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:75465600-75467800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:75465600-75468000	Weak transcription	HSMMtube	muscle
38	chr15:75465600-75468200	Weak transcription	HSMM	muscle
39	chr15:75465600-75471400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:75465800-75469800	Enhancers	HepG2	liver
41	chr15:75466200-75467600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr15:75466200-75467600	Weak transcription	HMEC	breast
43	chr15:75466200-75467800	Weak transcription	NHEK	skin
44	chr15:75466400-75469000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:75466400-75470200	Enhancers	Adipose Nuclei	Adipose
46	chr15:75466400-75475600	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr15:75466600-75470000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:75466800-75468000	Enhancers	A549	lung
49	chr15:75466800-75469800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr15:75466800-75470000	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links