Variant report

Variant	rs4886674
Chromosome Location	chr15:75469588-75469589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75431905..75433426-chr15:75469516..75471997,2	K562	blood:
2	chr15:75332035..75334503-chr15:75468873..75470789,3	MCF-7	breast:
3	chr15:75469534..75474777-chr15:75492822..75496497,7	MCF-7	breast:
4	chr15:75466784..75471130-chr15:75492777..75496350,7	MCF-7	breast:
5	chr15:75463144..75468102-chr15:75468873..75472339,5	K562	blood:
6	chr15:75461916..75464891-chr15:75468817..75471121,2	K562	blood:
7	chr15:75317681..75319554-chr15:75468092..75469844,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11857636	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12904018	0.86[EUR][1000 genomes]
rs2415155	0.91[AMR][1000 genomes]
rs4886675	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7163523	0.86[EUR][1000 genomes]
rs73437050	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75454200-75470000	Weak transcription	Thymus	Thymus
2	chr15:75463000-75470600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:75463200-75470000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr15:75463600-75469800	Weak transcription	Small Intestine	intestine
5	chr15:75463600-75471000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr15:75464000-75470200	Weak transcription	Left Ventricle	heart
7	chr15:75464400-75470400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:75464400-75470600	Weak transcription	HUVEC	blood vessel
9	chr15:75464800-75469800	Weak transcription	NHLF	lung
10	chr15:75464800-75470000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:75464800-75470400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:75465000-75469800	Weak transcription	Fetal Heart	heart
13	chr15:75465600-75471400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:75465800-75469800	Enhancers	HepG2	liver
15	chr15:75466400-75470200	Enhancers	Adipose Nuclei	Adipose
16	chr15:75466400-75475600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr15:75466600-75470000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:75466800-75469800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:75466800-75470000	Weak transcription	Right Ventricle	heart
20	chr15:75466800-75470200	Weak transcription	Esophagus	oesophagus
21	chr15:75466800-75473400	Enhancers	Placenta	Placenta
22	chr15:75467600-75471400	Enhancers	Primary hematopoietic stem cells	blood
23	chr15:75467800-75470200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr15:75467800-75470600	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr15:75467800-75471200	Enhancers	Stomach Mucosa	stomach
26	chr15:75467800-75471600	Weak transcription	Fetal Kidney	kidney
27	chr15:75468000-75470600	Enhancers	HSMMtube	muscle
28	chr15:75468200-75470600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:75468200-75470800	Enhancers	HSMM	muscle
30	chr15:75468400-75470000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:75468400-75470000	Weak transcription	Ovary	ovary
32	chr15:75468400-75470000	Weak transcription	K562	blood
33	chr15:75468400-75470000	Weak transcription	NHDF-Ad	bronchial
34	chr15:75468400-75470200	Weak transcription	Colonic Mucosa	Colon
35	chr15:75468400-75470400	Enhancers	A549	lung
36	chr15:75468600-75472000	Enhancers	Lung	lung
37	chr15:75468800-75470000	Enhancers	Fetal Muscle Trunk	muscle
38	chr15:75468800-75470000	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr15:75468800-75470200	Enhancers	Fetal Muscle Leg	muscle
40	chr15:75468800-75470600	Enhancers	Pancreas	Pancrea
41	chr15:75468800-75472600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:75469000-75469800	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr15:75469000-75470000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr15:75469000-75470000	Weak transcription	GM12878-XiMat	blood
45	chr15:75469000-75470200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:75469000-75470400	Weak transcription	Primary B cells from cord blood	blood
47	chr15:75469000-75470600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:75469000-75472000	Enhancers	Gastric	stomach
49	chr15:75469000-75472000	Enhancers	Spleen	Spleen
50	chr15:75469200-75469600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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