Variant report

Variant	rs11861127
Chromosome Location	chr16:48186373-48186374
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48185871..48187657-chr16:48188153..48190040,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140798	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10163354	0.83[CHD][hapmap];0.84[ASN][1000 genomes]
rs10163462	0.84[ASN][1000 genomes]
rs11861031	0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs11863233	0.83[CHD][hapmap]
rs11863325	0.84[ASN][1000 genomes]
rs11866251	0.83[CHD][hapmap];0.84[ASN][1000 genomes]
rs11866529	0.83[CHD][hapmap]
rs16945869	0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs16945874	0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs16945916	0.83[ASW][hapmap];0.83[CHD][hapmap];0.89[YRI][hapmap];0.84[ASN][1000 genomes]
rs16945917	0.84[ASN][1000 genomes]
rs16945919	0.83[CHD][hapmap];0.84[ASN][1000 genomes]
rs16945972	0.83[CHD][hapmap]
rs16945974	0.83[CHD][hapmap]
rs17743256	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41280937	0.85[EUR][1000 genomes]
rs41280939	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57889627	0.85[EUR][1000 genomes]
rs57912486	0.84[ASN][1000 genomes]
rs61450339	0.85[EUR][1000 genomes]
rs62058521	0.84[ASN][1000 genomes]
rs62058522	0.84[ASN][1000 genomes]
rs62058526	0.84[ASN][1000 genomes]
rs62058528	0.84[ASN][1000 genomes]
rs6500330	0.85[EUR][1000 genomes]
rs6500339	0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7184831	0.84[ASN][1000 genomes]
rs7187233	0.84[ASN][1000 genomes]
rs7191844	0.83[CHD][hapmap];0.84[ASN][1000 genomes]
rs7193531	0.85[EUR][1000 genomes]
rs7203695	0.84[ASN][1000 genomes]
rs7206909	0.83[CHD][hapmap];0.84[ASN][1000 genomes]
rs74018266	0.85[EUR][1000 genomes]
rs74018298	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74018300	0.84[ASN][1000 genomes]
rs8047091	0.83[CHD][hapmap]
rs8049005	0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs8050120	0.84[ASN][1000 genomes]
rs8051205	0.83[CHD][hapmap]
rs8052732	0.85[EUR][1000 genomes]
rs8054564	0.81[TSI][hapmap]
rs8056100	0.83[CHD][hapmap]
rs8058341	0.85[EUR][1000 genomes]
rs8058522	0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs8062222	0.85[EUR][1000 genomes]
rs8062641	0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs957881	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9939742	0.83[CHD][hapmap]
rs9941123	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48168200-48188800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:48172000-48186600	Weak transcription	Fetal Brain Male	brain
3	chr16:48184200-48190000	Weak transcription	Right Atrium	heart
4	chr16:48185800-48187800	Weak transcription	Fetal Brain Female	brain

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