Variant report

Variant	rs8062222
Chromosome Location	chr16:48180082-48180083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11861127	0.85[EUR][1000 genomes]
rs11861448	0.82[ASW][hapmap];0.83[LWK][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs16945869	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945874	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17743256	0.82[EUR][1000 genomes]
rs3743989	1.00[CHD][hapmap]
rs41280937	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41280939	0.82[EUR][1000 genomes]
rs57889627	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58298382	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61450339	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6500330	0.85[CEU][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7193531	0.85[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018255	0.81[AFR][1000 genomes]
rs74018266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018298	0.85[EUR][1000 genomes]
rs8049005	0.85[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8052732	0.81[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8054564	0.85[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs8058341	0.85[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8058522	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8062641	0.85[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs957881	1.00[GIH][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48168200-48188800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:48172000-48186600	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links