Variant report

Variant	rs11862663
Chromosome Location	chr16:75694453-75694454
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75691958..75693608-chr16:75693696..75696714,3	MCF-7	breast:
2	chr16:75689969..75691811-chr16:75693985..75695587,2	K562	blood:
3	chr16:75689525..75691811-chr16:75693504..75695587,3	K562	blood:

Variant related genes	Relation type
ENSG00000166848	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11865874	1.00[AMR][1000 genomes]
rs16941400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16941865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16975622	1.00[AMR][1000 genomes]
rs1874023	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2098737	1.00[AMR][1000 genomes]
rs2099447	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2161699	1.00[AMR][1000 genomes]
rs2865829	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs36101987	0.86[AFR][1000 genomes]
rs3896549	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8046646	1.00[AMR][1000 genomes]
rs8047561	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1062010	chr16:75628562-75825725	Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1064880	chr16:75628562-75895699	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv542960	chr16:75628562-75895699	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv1065543	chr16:75631306-75800170	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75684600-75695400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:75686400-75695800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr16:75686600-75695200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:75687000-75695400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr16:75687400-75696000	Strong transcription	Fetal Muscle Trunk	muscle
6	chr16:75687600-75694600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr16:75687600-75695600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr16:75687600-75696000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr16:75687600-75696000	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr16:75687600-75696400	Strong transcription	Primary B cells from cord blood	blood
11	chr16:75687600-75696400	Strong transcription	Fetal Stomach	stomach
12	chr16:75687800-75694600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr16:75687800-75694800	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr16:75687800-75695400	Strong transcription	Fetal Thymus	thymus
15	chr16:75687800-75695800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr16:75687800-75696200	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr16:75687800-75696200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr16:75688000-75694800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr16:75688000-75695200	Strong transcription	Liver	Liver
20	chr16:75688000-75695200	Strong transcription	GM12878-XiMat	blood
21	chr16:75688000-75695800	Strong transcription	Placenta	Placenta
22	chr16:75688200-75695800	Strong transcription	Primary T cells from cord blood	blood
23	chr16:75688200-75696000	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr16:75688200-75696000	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr16:75688400-75695600	Strong transcription	Primary hematopoietic stem cells	blood
26	chr16:75688400-75695600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr16:75688400-75695800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr16:75688400-75696000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr16:75688400-75696000	Strong transcription	NHDF-Ad	bronchial
30	chr16:75688600-75694600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr16:75688600-75695600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr16:75688600-75696400	Strong transcription	Primary B cells from peripheral blood	blood
33	chr16:75689400-75695000	Strong transcription	Spleen	Spleen
34	chr16:75689400-75696000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr16:75690600-75695200	Weak transcription	Aorta	Aorta
36	chr16:75690600-75697000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr16:75691400-75695000	Strong transcription	Fetal Intestine Small	intestine
38	chr16:75691400-75696000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr16:75691600-75695400	Weak transcription	Fetal Heart	heart
40	chr16:75691800-75694800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr16:75691800-75697000	Weak transcription	Fetal Kidney	kidney
42	chr16:75691800-75697200	Weak transcription	Fetal Brain Male	brain
43	chr16:75692000-75695200	Weak transcription	Small Intestine	intestine
44	chr16:75692200-75697000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr16:75692200-75697000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr16:75692200-75697400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr16:75692200-75699400	Weak transcription	HSMMtube	muscle
48	chr16:75692400-75694600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr16:75692400-75695000	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr16:75692400-75695000	Weak transcription	Placenta Amnion	Placenta Amnion

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