Variant report

Variant	rs2865829
Chromosome Location	chr16:75641212-75641213
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11862663	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11865874	1.00[AMR][1000 genomes]
rs16941400	1.00[AMR][1000 genomes]
rs16941865	1.00[AMR][1000 genomes]
rs16975622	1.00[AMR][1000 genomes]
rs1874023	1.00[AMR][1000 genomes]
rs2099447	1.00[AMR][1000 genomes]
rs2161699	1.00[AMR][1000 genomes]
rs3896549	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8046646	1.00[AMR][1000 genomes]
rs8047561	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1062010	chr16:75628562-75825725	Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1064880	chr16:75628562-75895699	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv542960	chr16:75628562-75895699	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv1065543	chr16:75631306-75800170	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75625600-75648000	Weak transcription	Fetal Heart	heart
2	chr16:75629000-75650600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:75629600-75654800	Strong transcription	Fetal Stomach	stomach
4	chr16:75630600-75654600	Strong transcription	Fetal Intestine Large	intestine
5	chr16:75631000-75649400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr16:75631400-75641800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr16:75631400-75654600	Strong transcription	Brain Hippocampus Middle	brain
8	chr16:75631400-75654600	Strong transcription	Fetal Muscle Leg	muscle
9	chr16:75631400-75655200	Strong transcription	Fetal Muscle Trunk	muscle
10	chr16:75632600-75654800	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr16:75632800-75643000	Strong transcription	HepG2	liver
12	chr16:75633000-75654400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr16:75633000-75654400	Strong transcription	Fetal Thymus	thymus
14	chr16:75633200-75654800	Strong transcription	Liver	Liver
15	chr16:75633400-75653200	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr16:75633600-75643200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr16:75634400-75654600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr16:75634400-75654800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr16:75635000-75647200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr16:75636200-75651200	Strong transcription	Hela-S3	cervix
21	chr16:75636400-75653800	Strong transcription	Placenta	Placenta
22	chr16:75636600-75641600	Weak transcription	Psoas Muscle	Psoas
23	chr16:75636600-75642800	Strong transcription	HMEC	breast
24	chr16:75636600-75648600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr16:75636600-75653800	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr16:75636600-75654200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr16:75636600-75654400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr16:75636600-75654400	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr16:75636600-75654800	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr16:75636800-75654200	Strong transcription	Fetal Brain Female	brain
31	chr16:75637000-75643000	Strong transcription	GM12878-XiMat	blood
32	chr16:75637000-75646000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr16:75637000-75648800	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr16:75637000-75654400	Strong transcription	Primary B cells from peripheral blood	blood
35	chr16:75637000-75654400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr16:75637000-75654600	Strong transcription	Primary T cells from cord blood	blood
37	chr16:75637000-75654600	Strong transcription	Fetal Intestine Small	intestine
38	chr16:75637200-75641400	Weak transcription	K562	blood
39	chr16:75637200-75649000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr16:75637200-75653400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr16:75637200-75654400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr16:75637400-75641600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr16:75637400-75654600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr16:75637400-75654600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr16:75637400-75654800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr16:75637400-75655200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr16:75637600-75642000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr16:75637800-75641600	Weak transcription	NHDF-Ad	bronchial
49	chr16:75637800-75641800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr16:75637800-75645800	Weak transcription	Colonic Mucosa	Colon

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