Variant report

Variant	rs11863075
Chromosome Location	chr16:82933772-82933773
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17674527	0.83[EUR][1000 genomes]
rs1991026	0.82[EUR][1000 genomes]
rs6565077	1.00[JPT][hapmap]
rs6565078	0.88[EUR][1000 genomes]
rs7186665	1.00[JPT][hapmap]
rs7200225	1.00[JPT][hapmap]
rs7205339	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8045708	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9929829	0.92[ASN][1000 genomes]
rs9937259	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2830385	chr16:82841335-82950413	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv573382	chr16:82905546-82950502	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1064158	chr16:82919690-82935671	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82915800-82953000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:82926800-82961200	Weak transcription	HSMM	muscle
3	chr16:82932600-82933800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr16:82932600-82934000	Enhancers	Psoas Muscle	Psoas
5	chr16:82932600-82934400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:82933000-82934200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:82933000-82934400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr16:82933000-82934600	Enhancers	HSMMtube	muscle
9	chr16:82933200-82934400	Enhancers	Adipose Nuclei	Adipose
10	chr16:82933200-82934400	Enhancers	Aorta	Aorta
11	chr16:82933200-82934400	Enhancers	Fetal Muscle Leg	muscle
12	chr16:82933200-82934400	Enhancers	Left Ventricle	heart
13	chr16:82933200-82934400	Enhancers	HMEC	breast
14	chr16:82933200-82934600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr16:82933200-82934600	Enhancers	Fetal Stomach	stomach
16	chr16:82933400-82934000	Enhancers	Right Ventricle	heart
17	chr16:82933400-82934000	Enhancers	NHEK	skin
18	chr16:82933400-82934400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr16:82933600-82933800	Enhancers	Fetal Intestine Small	intestine
20	chr16:82933600-82934800	Enhancers	HUVEC	blood vessel
21	chr16:82933600-82940600	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links