Variant report

Variant	rs1991026
Chromosome Location	chr16:82924537-82924538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82919356..82921414-chr16:82923083..82925361,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11150522	0.81[ASN][1000 genomes]
rs11150523	0.85[ASN][1000 genomes]
rs11649390	0.86[AMR][1000 genomes]
rs11863075	0.82[EUR][1000 genomes]
rs12919606	0.85[ASN][1000 genomes]
rs12923557	0.85[ASN][1000 genomes]
rs13331478	0.85[ASN][1000 genomes]
rs16958850	0.85[ASN][1000 genomes]
rs16958858	0.85[ASN][1000 genomes]
rs17674527	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17675094	0.85[ASN][1000 genomes]
rs1991028	0.85[ASN][1000 genomes]
rs28417188	0.85[ASN][1000 genomes]
rs28661446	0.85[ASN][1000 genomes]
rs34482883	0.85[ASN][1000 genomes]
rs35775260	0.85[ASN][1000 genomes]
rs4782737	0.85[ASN][1000 genomes]
rs4783299	0.85[ASN][1000 genomes]
rs4783300	0.85[ASN][1000 genomes]
rs62035221	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62035222	0.87[AMR][1000 genomes]
rs6565078	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7187633	0.81[ASN][1000 genomes]
rs7190538	0.81[ASN][1000 genomes]
rs7192482	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72790111	0.84[AMR][1000 genomes]
rs8045708	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9926654	0.85[ASN][1000 genomes]
rs9929829	0.82[EUR][1000 genomes]
rs9936335	0.85[ASN][1000 genomes]
rs9937259	0.94[EUR][1000 genomes]
rs9941327	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2830385	chr16:82841335-82950413	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv573382	chr16:82905546-82950502	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1064158	chr16:82919690-82935671	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82905800-82924800	Weak transcription	HSMM	muscle
2	chr16:82905800-82925200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr16:82910400-82932600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr16:82915800-82953000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr16:82918800-82933400	Weak transcription	NHEK	skin
6	chr16:82922400-82924800	Weak transcription	Psoas Muscle	Psoas
7	chr16:82922400-82925000	Weak transcription	HSMMtube	muscle
8	chr16:82922400-82925200	Weak transcription	Right Ventricle	heart
9	chr16:82922400-82925800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr16:82922600-82925000	Weak transcription	Aorta	Aorta
11	chr16:82922600-82925000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr16:82922600-82925000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr16:82922600-82925200	Weak transcription	Right Atrium	heart
14	chr16:82922600-82925800	Weak transcription	NH-A	brain
15	chr16:82922600-82933200	Weak transcription	Fetal Muscle Leg	muscle
16	chr16:82922600-82933200	Weak transcription	Left Ventricle	heart
17	chr16:82922800-82924800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr16:82922800-82925600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr16:82922800-82925600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr16:82922800-82925600	Weak transcription	Osteobl	bone
21	chr16:82924400-82924600	Enhancers	Fetal Muscle Trunk	muscle

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