Variant report

Variant	rs11863886
Chromosome Location	chr16:31477460-31477461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:31475154..31478732-chr16:31483245..31485698,3	MCF-7	breast:
2	chr16:31188773..31190894-chr16:31477404..31479097,2	K562	blood:

Variant related genes	Relation type
ENSG00000140682	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12240	1.00[CHB][hapmap]
rs2454907	1.00[CHB][hapmap]
rs2454909	1.00[CHB][hapmap]
rs2454911	1.00[CHB][hapmap]
rs34303653	1.00[ASN][1000 genomes]
rs73538351	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392534	chr16:31303038-31573066	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
2	nsv833194	chr16:31358179-31528545	Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	97 gene(s)	inside rSNPs	diseases
3	nsv905747	chr16:31394179-31888684	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	123 gene(s)	inside rSNPs	diseases
4	nsv905748	chr16:31427678-31559220	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
5	nsv905749	chr16:31427678-31565597	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	96 gene(s)	inside rSNPs	diseases
6	nsv905750	chr16:31427678-31587662	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	98 gene(s)	inside rSNPs	diseases
7	nsv905751	chr16:31431360-31489033	Bivalent Enhancer Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	82 gene(s)	inside rSNPs	diseases
8	nsv905752	chr16:31436932-31565597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	95 gene(s)	inside rSNPs	diseases
9	nsv905753	chr16:31436932-31587662	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	97 gene(s)	inside rSNPs	diseases
10	nsv905754	chr16:31451699-31565597	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31471000-31482600	Weak transcription	Small Intestine	intestine
2	chr16:31471800-31483000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:31472000-31478600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr16:31472000-31480400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr16:31472000-31481800	Weak transcription	NHDF-Ad	bronchial
6	chr16:31472000-31482000	Weak transcription	Fetal Heart	heart
7	chr16:31472000-31482400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr16:31472000-31482400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr16:31472000-31482600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr16:31472000-31482600	Weak transcription	Stomach Mucosa	stomach
11	chr16:31472200-31478400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr16:31472600-31478200	Weak transcription	K562	blood
13	chr16:31472600-31479000	Strong transcription	Adipose Nuclei	Adipose
14	chr16:31472600-31479000	Strong transcription	Fetal Intestine Small	intestine
15	chr16:31472600-31482600	Weak transcription	Fetal Brain Male	brain
16	chr16:31472600-31483000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr16:31472800-31477600	Strong transcription	HepG2	liver
18	chr16:31472800-31477800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr16:31472800-31478000	Weak transcription	GM12878-XiMat	blood
20	chr16:31472800-31478200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr16:31472800-31478400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr16:31472800-31478800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr16:31472800-31478800	Strong transcription	Esophagus	oesophagus
24	chr16:31472800-31482400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr16:31472800-31482400	Weak transcription	Hela-S3	cervix
26	chr16:31472800-31482400	Weak transcription	HMEC	breast
27	chr16:31472800-31482400	Weak transcription	HSMM	muscle
28	chr16:31473000-31477600	Strong transcription	Fetal Muscle Trunk	muscle
29	chr16:31473000-31478200	Strong transcription	Fetal Muscle Leg	muscle
30	chr16:31473000-31478600	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr16:31473000-31479000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr16:31473000-31479000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr16:31473000-31479000	Strong transcription	Fetal Stomach	stomach
34	chr16:31473200-31477800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr16:31473200-31477800	Strong transcription	Brain Substantia Nigra	brain
36	chr16:31473200-31477800	Strong transcription	Fetal Intestine Large	intestine
37	chr16:31473200-31478000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr16:31473200-31478000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr16:31473200-31478000	Strong transcription	Thymus	Thymus
40	chr16:31473200-31478200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr16:31473200-31478200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr16:31473200-31478400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr16:31473200-31478400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr16:31473200-31478400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr16:31473200-31478400	Strong transcription	Left Ventricle	heart
46	chr16:31473200-31478600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr16:31473200-31478600	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr16:31473200-31478600	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr16:31473200-31478800	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr16:31473200-31478800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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