Variant report

Variant	rs73538351
Chromosome Location	chr16:31493017-31493018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31486386..31493720-chr16:31496174..31501149,12	MCF-7	breast:
2	chr16:31470583..31473018-chr16:31491234..31494131,2	MCF-7	breast:
3	chr16:31492761..31494318-chr16:31516815..31518352,2	K562	blood:
4	chr16:31491434..31493805-chr16:31716545..31718864,2	K562	blood:
5	chr16:31492241..31494807-chr5:79702904..79705274,2	MCF-7	breast:
6	chr16:31190754..31192466-chr16:31491835..31493754,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131797	Chromatin interaction
ENSG00000039319	Chromatin interaction
ENSG00000260267	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000140691	Chromatin interaction
ENSG00000140675	Chromatin interaction
ENSG00000260740	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11863886	1.00[ASN][1000 genomes]
rs34303653	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392534	chr16:31303038-31573066	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
2	nsv833194	chr16:31358179-31528545	Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	97 gene(s)	inside rSNPs	diseases
3	nsv905747	chr16:31394179-31888684	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	123 gene(s)	inside rSNPs	diseases
4	nsv905748	chr16:31427678-31559220	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
5	nsv905749	chr16:31427678-31565597	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	96 gene(s)	inside rSNPs	diseases
6	nsv905750	chr16:31427678-31587662	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	98 gene(s)	inside rSNPs	diseases
7	nsv905752	chr16:31436932-31565597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	95 gene(s)	inside rSNPs	diseases
8	nsv905753	chr16:31436932-31587662	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	97 gene(s)	inside rSNPs	diseases
9	nsv905754	chr16:31451699-31565597	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31486600-31495800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:31486800-31495800	Weak transcription	HMEC	breast
3	chr16:31487400-31493400	Weak transcription	HSMM	muscle
4	chr16:31488800-31495800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr16:31489000-31495800	Weak transcription	Gastric	stomach
6	chr16:31489400-31496000	Weak transcription	NH-A	brain
7	chr16:31489400-31496200	Weak transcription	Fetal Lung	lung
8	chr16:31489400-31496200	Weak transcription	A549	lung
9	chr16:31489400-31498600	Weak transcription	Esophagus	oesophagus
10	chr16:31489400-31498600	Weak transcription	Ovary	ovary
11	chr16:31489600-31498600	Weak transcription	Left Ventricle	heart
12	chr16:31489600-31498800	Weak transcription	Aorta	Aorta
13	chr16:31490000-31494400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr16:31490000-31498400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr16:31490000-31498600	Weak transcription	Liver	Liver
16	chr16:31490200-31493400	Bivalent Enhancer	HepG2	liver
17	chr16:31490600-31498600	Weak transcription	Pancreas	Pancrea
18	chr16:31490800-31493600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr16:31490800-31496000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr16:31491200-31495200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr16:31491200-31495800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr16:31491400-31495800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr16:31491400-31495800	Weak transcription	Colonic Mucosa	Colon
24	chr16:31492200-31493200	Enhancers	Placenta Amnion	Placenta Amnion
25	chr16:31492400-31495800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr16:31492400-31497800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr16:31492400-31498600	Weak transcription	Right Atrium	heart
28	chr16:31492600-31495800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr16:31492600-31496000	Weak transcription	Right Ventricle	heart
30	chr16:31492600-31496000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr16:31492600-31497800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr16:31492600-31498600	Weak transcription	Spleen	Spleen
33	chr16:31492800-31495200	Weak transcription	Fetal Intestine Large	intestine
34	chr16:31492800-31495200	Weak transcription	Fetal Intestine Small	intestine
35	chr16:31492800-31495800	Weak transcription	Fetal Heart	heart
36	chr16:31492800-31495800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr16:31492800-31496000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr16:31492800-31496000	Weak transcription	Lung	lung
39	chr16:31492800-31497800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr16:31493000-31495800	Weak transcription	K562	blood

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