Variant report

Variant	rs11864242
Chromosome Location	chr16:71732321-71732322
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11860038	1.00[AFR][1000 genomes]
rs11860518	1.00[AFR][1000 genomes]
rs11863079	1.00[AFR][1000 genomes]
rs11865243	1.00[AFR][1000 genomes]
rs11865253	1.00[AFR][1000 genomes]
rs11865412	1.00[AFR][1000 genomes]
rs11865516	1.00[AFR][1000 genomes]
rs11866326	1.00[AFR][1000 genomes]
rs11866483	0.86[AFR][1000 genomes]
rs11866980	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1063338	chr16:71612346-71752968	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv1817133	chr16:71705908-71837477	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
5	nsv984350	chr16:71727606-71735524	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71672000-71741400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:71683800-71756600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:71685200-71741200	Weak transcription	Psoas Muscle	Psoas
4	chr16:71690600-71733600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr16:71690600-71741200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr16:71693000-71756400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr16:71702000-71756200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr16:71705000-71741600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr16:71705000-71756200	Weak transcription	Colon Smooth Muscle	Colon
10	chr16:71705000-71756800	Weak transcription	Gastric	stomach
11	chr16:71705400-71733000	Weak transcription	Pancreas	Pancrea
12	chr16:71707400-71750200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr16:71710400-71735800	Weak transcription	Right Ventricle	heart
14	chr16:71710600-71741800	Weak transcription	Spleen	Spleen
15	chr16:71710600-71756200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr16:71710600-71756400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr16:71710600-71756800	Weak transcription	Lung	lung
18	chr16:71711200-71756400	Weak transcription	K562	blood
19	chr16:71713200-71734800	Weak transcription	Placenta	Placenta
20	chr16:71713400-71739800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr16:71713400-71741600	Weak transcription	NHLF	lung
22	chr16:71714600-71733200	Weak transcription	Brain Germinal Matrix	brain
23	chr16:71715800-71741200	Weak transcription	Hela-S3	cervix
24	chr16:71715800-71756000	Weak transcription	Brain Hippocampus Middle	brain
25	chr16:71716600-71732800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr16:71716800-71756600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr16:71719000-71739800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr16:71720200-71733000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr16:71721600-71748400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr16:71724000-71741400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr16:71724200-71732400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr16:71724200-71736000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr16:71724400-71733200	Weak transcription	HSMMtube	muscle
34	chr16:71724400-71733400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr16:71724400-71734800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr16:71724400-71748800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr16:71724400-71756000	Weak transcription	Dnd41	blood
38	chr16:71724400-71756200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr16:71724600-71732400	Weak transcription	Brain Angular Gyrus	brain
40	chr16:71724600-71733000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr16:71724600-71733000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr16:71724600-71733200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr16:71724600-71733200	Weak transcription	Ovary	ovary
44	chr16:71724600-71735200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr16:71724600-71735400	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr16:71724600-71741200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr16:71724600-71756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr16:71724800-71732400	Weak transcription	HepG2	liver
49	chr16:71724800-71733200	Weak transcription	Brain Substantia Nigra	brain
50	chr16:71724800-71733200	Weak transcription	Fetal Lung	lung

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