Variant report

Variant	rs11866326
Chromosome Location	chr16:71851885-71851886
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71842412..71844852-chr16:71850113..71852439,2	MCF-7	breast:
2	chr16:71842293..71844591-chr16:71850006..71852078,2	K562	blood:

Variant related genes	Relation type
ENSG00000166747	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11860038	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11860518	1.00[AFR][1000 genomes]
rs11863079	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11864242	1.00[AFR][1000 genomes]
rs11865243	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11865253	1.00[AFR][1000 genomes]
rs11865412	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11865516	1.00[AFR][1000 genomes]
rs11866483	0.86[AFR][1000 genomes]
rs11866980	1.00[ASW][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71843600-71852600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:71843800-71855400	Weak transcription	Primary T cells from cord blood	blood
3	chr16:71843800-71861600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr16:71844000-71859400	Weak transcription	Fetal Intestine Small	intestine
5	chr16:71844200-71862200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr16:71844800-71862000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr16:71848600-71852200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr16:71850200-71852000	Enhancers	Primary B cells from peripheral blood	blood
9	chr16:71850200-71852200	Enhancers	Placenta	Placenta
10	chr16:71850400-71852200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:71850400-71852200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr16:71850600-71852000	Enhancers	Primary T cells fromperipheralblood	blood
13	chr16:71850600-71852000	Enhancers	HMEC	breast
14	chr16:71850600-71852200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr16:71850800-71852000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr16:71850800-71852000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr16:71850800-71852200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr16:71850800-71852200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr16:71851000-71852000	Enhancers	NHEK	skin
20	chr16:71851000-71852200	Enhancers	A549	lung
21	chr16:71851000-71855000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr16:71851000-71859600	Weak transcription	K562	blood
23	chr16:71851000-71860400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr16:71851200-71852200	Enhancers	HepG2	liver
25	chr16:71851200-71852200	Enhancers	NH-A	brain
26	chr16:71851200-71862200	Weak transcription	Fetal Stomach	stomach
27	chr16:71851200-71866400	Weak transcription	HSMMtube	muscle
28	chr16:71851400-71852200	Enhancers	Brain Angular Gyrus	brain
29	chr16:71851400-71852200	Enhancers	Brain Substantia Nigra	brain
30	chr16:71851400-71852200	Enhancers	Colon Smooth Muscle	Colon
31	chr16:71851400-71852200	Flanking Active TSS	GM12878-XiMat	blood
32	chr16:71851400-71852400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr16:71851600-71852000	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr16:71851600-71852000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr16:71851600-71852000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr16:71851600-71852000	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr16:71851600-71852200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr16:71851600-71852200	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr16:71851600-71852200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr16:71851600-71852200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr16:71851600-71852200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr16:71851600-71852200	Enhancers	Brain Cingulate Gyrus	brain
43	chr16:71851600-71852200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr16:71851600-71852200	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr16:71851600-71852200	Enhancers	Ovary	ovary
46	chr16:71851600-71852200	Enhancers	Rectal Smooth Muscle	rectum
47	chr16:71851600-71852200	Enhancers	HSMM	muscle
48	chr16:71851600-71852400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr16:71851600-71853800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr16:71851800-71852000	Weak transcription	Fetal Muscle Leg	muscle

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