Variant report

Variant	rs11866379
Chromosome Location	chr16:70842097-70842098
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70833576..70837048-chr16:70841075..70846592,7	K562	blood:
2	chr16:70833771..70835992-chr16:70841560..70844317,2	MCF-7	breast:
3	chr16:70833054..70836189-chr16:70840961..70843953,5	MCF-7	breast:
4	chr16:70838203..70840751-chr16:70840809..70843253,2	MCF-7	breast:
5	chr16:70833200..70838396-chr16:70839036..70844096,11	K562	blood:
6	chr16:70837606..70840340-chr16:70840352..70843516,3	K562	blood:

Variant related genes	Relation type
ENSG00000103043	Chromatin interaction
ENSG00000262890	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1009285	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11863319	0.93[ASN][1000 genomes]
rs11864614	0.89[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.90[LWK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12920588	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12924064	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12926985	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12928270	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12929374	0.87[ASN][1000 genomes]
rs12934723	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12935645	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13335758	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1551528	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs1551529	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16943619	0.87[CEU][hapmap]
rs16970484	1.00[JPT][hapmap]
rs16970513	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs16970543	0.82[YRI][hapmap]
rs16970545	0.88[YRI][hapmap]
rs17248914	1.00[JPT][hapmap]
rs34268521	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35144432	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35426120	0.89[ASN][1000 genomes]
rs35665975	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3760118	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3855651	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4985364	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs52826576	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60190856	0.93[ASN][1000 genomes]
rs6416703	0.90[EUR][1000 genomes]
rs6499336	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs713511	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71384769	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71401831	0.89[ASN][1000 genomes]
rs7185921	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7188712	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7190628	0.85[YRI][hapmap]
rs7192013	0.88[YRI][hapmap]
rs7194091	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7202363	0.92[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs8044133	0.91[ASN][1000 genomes]
rs8052615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8060947	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9931380	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061191	chr16:70754975-71201367	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv1059478	chr16:70773597-71237055	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2758429	chr16:70807122-71316983	Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	esv2758653	chr16:70807122-71316983	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv916160	chr16:70809280-71120138	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	esv2757641	chr16:70833949-71200049	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv1057834	chr16:70842097-71075615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70835600-70842800	Weak transcription	Brain Anterior Caudate	brain
2	chr16:70841400-70842200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr16:70842000-70843800	Weak transcription	Fetal Thymus	thymus
4	chr16:70842000-70844000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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