Variant report

Variant	rs35426120
Chromosome Location	chr16:70833395-70833396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70819115..70820995-chr16:70831626..70833451,2	K562	blood:
2	chr16:70832067..70833569-chr16:70833602..70835728,2	MCF-7	breast:
3	chr16:70832610..70835420-chr16:70895193..70897574,2	MCF-7	breast:
4	chr16:70816811..70818321-chr16:70832998..70834793,2	K562	blood:
5	chr16:70811715..70814329-chr16:70831689..70834384,2	MCF-7	breast:
6	chr16:70820021..70824247-chr16:70832528..70836441,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157423	Chromatin interaction
ENSG00000103043	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1009285	0.85[ASN][1000 genomes]
rs11863319	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11864614	0.94[ASN][1000 genomes]
rs11866379	0.89[ASN][1000 genomes]
rs12920588	0.85[ASN][1000 genomes]
rs12924064	0.87[ASN][1000 genomes]
rs12926985	0.98[ASN][1000 genomes]
rs12928270	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12929374	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12934723	0.98[ASN][1000 genomes]
rs12935645	0.98[ASN][1000 genomes]
rs13335758	0.93[ASN][1000 genomes]
rs1551528	0.84[ASN][1000 genomes]
rs1551529	0.87[ASN][1000 genomes]
rs16970513	0.86[ASN][1000 genomes]
rs28676580	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34268521	0.89[ASN][1000 genomes]
rs35144432	0.93[ASN][1000 genomes]
rs35665975	0.85[ASN][1000 genomes]
rs3760118	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3855651	0.89[ASN][1000 genomes]
rs4985364	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4985425	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs52826576	0.85[ASN][1000 genomes]
rs60190856	0.89[ASN][1000 genomes]
rs713511	0.96[ASN][1000 genomes]
rs71384769	0.93[ASN][1000 genomes]
rs71401831	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7185921	0.86[ASN][1000 genomes]
rs7188712	0.82[ASN][1000 genomes]
rs7202363	0.96[ASN][1000 genomes]
rs8044133	0.98[ASN][1000 genomes]
rs8052615	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8060947	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9931380	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517391	chr16:70666410-70840490	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv457517	chr16:70666722-70840490	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv572945	chr16:70666722-70840490	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1061191	chr16:70754975-71201367	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	nsv1059478	chr16:70773597-71237055	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
6	esv2758429	chr16:70807122-71316983	Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
7	esv2758653	chr16:70807122-71316983	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
8	nsv916160	chr16:70809280-71120138	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70805200-70834000	Weak transcription	Fetal Heart	heart
2	chr16:70807400-70833800	Weak transcription	Fetal Brain Male	brain
3	chr16:70818400-70833400	Weak transcription	HUVEC	blood vessel
4	chr16:70819000-70833400	Weak transcription	K562	blood
5	chr16:70819400-70833600	Weak transcription	NHDF-Ad	bronchial
6	chr16:70819400-70833800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr16:70819800-70833400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr16:70820000-70833400	Weak transcription	HSMMtube	muscle
9	chr16:70820200-70833400	Weak transcription	Esophagus	oesophagus
10	chr16:70820200-70833400	Weak transcription	NHLF	lung
11	chr16:70820200-70833600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr16:70820200-70833800	Weak transcription	Brain Hippocampus Middle	brain
13	chr16:70820200-70834000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr16:70820400-70833800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr16:70820400-70834000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr16:70820400-70834000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr16:70820400-70834200	Weak transcription	Colonic Mucosa	Colon
18	chr16:70820400-70834200	Weak transcription	Left Ventricle	heart
19	chr16:70820400-70834200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr16:70820400-70834400	Weak transcription	Aorta	Aorta
21	chr16:70820600-70833400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr16:70820600-70833400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr16:70820600-70833600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr16:70820600-70833600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr16:70820800-70833400	Weak transcription	NHEK	skin
26	chr16:70820800-70833600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr16:70820800-70834200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr16:70821200-70834000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr16:70821800-70833400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr16:70821800-70833600	Weak transcription	Right Ventricle	heart
31	chr16:70822400-70834200	Weak transcription	Placenta	Placenta
32	chr16:70823400-70833600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr16:70823400-70834200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr16:70823800-70833600	Weak transcription	Fetal Kidney	kidney
35	chr16:70823800-70834000	Weak transcription	Osteobl	bone
36	chr16:70824000-70833400	Weak transcription	Fetal Stomach	stomach
37	chr16:70824000-70834000	Weak transcription	Ovary	ovary
38	chr16:70824000-70834200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr16:70824200-70833800	Weak transcription	A549	lung
40	chr16:70824200-70834200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr16:70824800-70834200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr16:70825400-70834200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr16:70825800-70834200	Weak transcription	Gastric	stomach
44	chr16:70826000-70833600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr16:70826000-70834000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr16:70829800-70834200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr16:70830000-70834000	Weak transcription	Fetal Thymus	thymus
48	chr16:70830800-70833400	Strong transcription	Fetal Muscle Leg	muscle
49	chr16:70831000-70833400	Strong transcription	Primary hematopoietic stem cells	blood
50	chr16:70831600-70833800	Weak transcription	NH-A	brain

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