Variant report

Variant	rs11866620
Chromosome Location	chr16:80553742-80553743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs35968504	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4522433	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4533300	0.84[AFR][1000 genomes]
rs4586444	0.84[AFR][1000 genomes]
rs4888092	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80551800-80553800	Enhancers	Primary T cells from cord blood	blood
2	chr16:80551800-80553800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr16:80551800-80554000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr16:80552000-80553800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr16:80552200-80553800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr16:80552200-80553800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr16:80552400-80553800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr16:80552400-80553800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr16:80552600-80554800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr16:80552800-80555000	Weak transcription	Aorta	Aorta
11	chr16:80553000-80553800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr16:80553000-80553800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr16:80553200-80554000	Enhancers	Primary T helper naive cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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