Variant report

Variant	rs35968504
Chromosome Location	chr16:80552683-80552684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11866620	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4522433	0.85[ASN][1000 genomes]
rs72822240	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80551800-80553400	Enhancers	Primary B cells from peripheral blood	blood
2	chr16:80551800-80553400	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr16:80551800-80553800	Enhancers	Primary T cells from cord blood	blood
4	chr16:80551800-80553800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr16:80551800-80554000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr16:80552000-80553800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr16:80552200-80553000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr16:80552200-80553200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr16:80552200-80553600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr16:80552200-80553800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr16:80552200-80553800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr16:80552400-80552800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr16:80552400-80553200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr16:80552400-80553400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr16:80552400-80553400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr16:80552400-80553400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr16:80552400-80553400	Enhancers	Lung	lung
18	chr16:80552400-80553600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr16:80552400-80553600	Enhancers	Adipose Nuclei	Adipose
20	chr16:80552400-80553800	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr16:80552400-80553800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr16:80552600-80553000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr16:80552600-80554800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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