Variant report

Variant	rs11868509
Chromosome Location	chr17:46318175-46318176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46297106..46299092-chr17:46317071..46320031,2	K562	blood:
2	chr17:46304702..46306804-chr17:46316986..46319945,3	K562	blood:
3	chr17:46317007..46319839-chr17:46328201..46331501,3	K562	blood:
4	chr17:46312738..46316050-chr17:46317088..46320426,4	K562	blood:
5	chr17:46316932..46321831-chr17:46322420..46326261,9	K562	blood:
6	chr17:46297106..46299092-chr17:46317071..46320404,3	K562	blood:
7	chr17:46237804..46239741-chr17:46316113..46318637,2	MCF-7	breast:
8	chr17:46260519..46263689-chr17:46315938..46318852,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000263787	Chromatin interaction
ENSG00000141293	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11079811	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11079812	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12449324	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12602010	0.89[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.93[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12948653	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes]
rs1316643	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs16954750	0.81[YRI][hapmap]
rs17619103	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs35371915	0.82[AFR][1000 genomes]
rs7215582	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7221416	0.89[AFR][1000 genomes]
rs8438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11868509	HOXB2	cis	multi-tissue	Pritchard

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr17:46306600-46335400	Weak transcription	Thymus	Thymus
3	chr17:46312800-46318800	Enhancers	HUVEC	blood vessel
4	chr17:46314000-46318200	Enhancers	NHDF-Ad	bronchial
5	chr17:46314200-46320200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr17:46315200-46319400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:46315800-46319600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr17:46315800-46319600	Enhancers	HMEC	breast
9	chr17:46315800-46319800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:46315800-46319800	Enhancers	HSMM	muscle
11	chr17:46315800-46319800	Enhancers	Osteobl	bone
12	chr17:46315800-46323000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr17:46316000-46318600	Weak transcription	Right Atrium	heart
14	chr17:46316400-46319600	Enhancers	NH-A	brain
15	chr17:46316400-46322800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr17:46316400-46324600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr17:46316600-46319800	Enhancers	Fetal Muscle Leg	muscle
18	chr17:46316600-46320200	Enhancers	Fetal Kidney	kidney
19	chr17:46316600-46320600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr17:46317000-46319000	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr17:46317200-46318800	Enhancers	Colon Smooth Muscle	Colon
22	chr17:46317200-46319000	Enhancers	HSMMtube	muscle
23	chr17:46317200-46320000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr17:46317200-46320200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr17:46317200-46322600	Enhancers	Fetal Intestine Small	intestine
26	chr17:46317200-46324000	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr17:46317400-46318600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr17:46317400-46319200	Enhancers	Brain Germinal Matrix	brain
29	chr17:46317400-46319200	Enhancers	Fetal Heart	heart
30	chr17:46317400-46319800	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr17:46317400-46319800	Enhancers	Adipose Nuclei	Adipose
32	chr17:46317400-46319800	Enhancers	Small Intestine	intestine
33	chr17:46317400-46322400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr17:46317400-46322800	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr17:46317400-46322800	Enhancers	Fetal Intestine Large	intestine
36	chr17:46317600-46319200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr17:46317600-46319400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr17:46317600-46319400	Enhancers	Primary hematopoietic stem cells	blood
39	chr17:46317600-46319400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr17:46317600-46319600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr17:46317600-46319600	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr17:46317600-46319600	Enhancers	Fetal Lung	lung
43	chr17:46317600-46319800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr17:46317600-46319800	Enhancers	Primary T cells fromperipheralblood	blood
45	chr17:46317600-46319800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr17:46317600-46319800	Enhancers	Fetal Stomach	stomach
47	chr17:46317600-46320400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr17:46317800-46318800	Genic enhancers	Primary T cells from cord blood	blood
49	chr17:46317800-46319000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr17:46317800-46319000	Enhancers	Rectal Mucosa Donor 31	rectum

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