Variant report

Variant	rs16954750
Chromosome Location	chr17:46368844-46368845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr17:46368784-46368957	SH-SY5Y	brain:	n/a	chr17:46368887-46368896

No.	Distal block	Cell Line	Cell type
1	chr17:46301515..46304041-chr17:46368069..46369747,2	K562	blood:
2	chr17:46367583..46369623-chr17:46373634..46375148,2	MCF-7	breast:
3	chr17:46367902..46370246-chr20:53307724..53309375,2	MCF-7	breast:
4	chr17:46361077..46363671-chr17:46367230..46370721,3	K562	blood:

Variant related genes	Relation type
ENSG00000235300	TF binding region

rs_ID	r²[population]
rs11079811	0.81[YRI][hapmap]
rs11079812	0.81[YRI][hapmap]
rs11868509	0.81[YRI][hapmap]
rs12449324	0.81[YRI][hapmap]
rs1316643	0.81[YRI][hapmap]
rs16958023	1.00[EUR][1000 genomes]
rs17619103	0.81[YRI][hapmap]
rs17694192	0.81[YRI][hapmap]
rs35114525	1.00[EUR][1000 genomes]
rs57519584	1.00[EUR][1000 genomes]
rs7213899	1.00[EUR][1000 genomes]
rs7215174	1.00[EUR][1000 genomes]
rs7218848	0.81[YRI][hapmap]
rs8081754	0.81[YRI][hapmap]
rs8082116	1.00[EUR][1000 genomes]

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46343400-46371200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:46356600-46370000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:46356600-46370800	Weak transcription	GM12878-XiMat	blood
7	chr17:46357000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr17:46357000-46371200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:46357400-46371200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr17:46357600-46371400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr17:46358200-46371000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr17:46361400-46371000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr17:46361600-46371000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr17:46361600-46371800	Weak transcription	Primary T cells from cord blood	blood
15	chr17:46362200-46371000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr17:46363200-46370800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr17:46368000-46370000	Weak transcription	Fetal Intestine Small	intestine
18	chr17:46368000-46371600	Weak transcription	HUVEC	blood vessel
19	chr17:46368200-46371000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr17:46368600-46370000	Weak transcription	A549	lung

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