Variant report

Variant	rs11868680
Chromosome Location	chr17:66465580-66465581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1808335	0.95[CHB][hapmap]
rs2111508	0.91[ASN][1000 genomes]
rs2302783	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs2909211	0.87[ASN][1000 genomes]
rs2909213	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs2909216	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2909217	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2909218	0.91[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap];0.94[LWK][hapmap];0.84[MEX][hapmap];0.92[MKK][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2909220	0.88[ASN][1000 genomes]
rs2909221	0.87[ASN][1000 genomes]
rs2952279	0.83[CHB][hapmap]
rs2952280	0.83[CHB][hapmap]
rs2952286	0.85[ASN][1000 genomes]
rs2952289	0.91[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap];0.94[LWK][hapmap];0.84[MEX][hapmap];0.92[MKK][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2952290	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2952294	0.91[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs2952296	0.89[CHB][hapmap];0.80[ASN][1000 genomes]
rs71378928	0.83[ASN][1000 genomes]
rs883541	0.91[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66454600-66470400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr17:66456800-66470400	Weak transcription	Right Ventricle	heart
3	chr17:66459200-66466200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr17:66460400-66470400	Weak transcription	Ovary	ovary
5	chr17:66462600-66467600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr17:66462800-66470400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr17:66463400-66465800	Flanking Active TSS	Fetal Heart	heart
8	chr17:66464000-66465800	Enhancers	HSMM	muscle
9	chr17:66464200-66465600	Enhancers	NH-A	brain
10	chr17:66464200-66468600	Weak transcription	Left Ventricle	heart
11	chr17:66464400-66465800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr17:66464400-66465800	Enhancers	HepG2	liver
13	chr17:66465200-66465600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr17:66465200-66466200	Enhancers	HSMMtube	muscle
15	chr17:66465200-66467800	Weak transcription	Fetal Muscle Leg	muscle
16	chr17:66465400-66467400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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