Variant report

Variant	rs2952286
Chromosome Location	chr17:66469400-66469401
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11868680	0.85[ASN][1000 genomes]
rs2111508	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2361953	0.83[AMR][1000 genomes]
rs2909211	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2909213	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2909216	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2909217	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2909218	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2909220	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2909221	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2952277	0.80[AMR][1000 genomes]
rs2952279	0.80[AMR][1000 genomes]
rs2952280	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2952283	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2952284	0.82[AMR][1000 genomes]
rs2952289	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2952290	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2952294	0.82[ASN][1000 genomes]
rs71378928	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2952286	PRKAR1A	cis	Artery Tibial	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66454600-66470400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr17:66456800-66470400	Weak transcription	Right Ventricle	heart
3	chr17:66460400-66470400	Weak transcription	Ovary	ovary
4	chr17:66462800-66470400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr17:66467600-66469800	Weak transcription	Fetal Heart	heart
6	chr17:66467800-66470000	Weak transcription	HepG2	liver
7	chr17:66467800-66487000	Weak transcription	Right Atrium	heart
8	chr17:66468600-66469400	Weak transcription	Fetal Muscle Leg	muscle
9	chr17:66468600-66470000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr17:66468600-66470400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr17:66469400-66469600	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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