Variant report

Variant	rs2361953
Chromosome Location	chr17:66470892-66470893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12451558	0.87[ASN][1000 genomes]
rs2952277	0.87[ASN][1000 genomes]
rs2952279	0.89[ASN][1000 genomes]
rs2952280	0.89[ASN][1000 genomes]
rs2952283	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2952284	0.88[ASN][1000 genomes]
rs2952286	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66467800-66487000	Weak transcription	Right Atrium	heart
2	chr17:66470000-66471600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr17:66470400-66471000	Enhancers	Liver	Liver
4	chr17:66470400-66471000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr17:66470400-66471000	Enhancers	Placenta	Placenta
6	chr17:66470400-66471000	Enhancers	Ovary	ovary
7	chr17:66470400-66471000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr17:66470400-66471200	Flanking Active TSS	HepG2	liver
9	chr17:66470400-66471400	Enhancers	Fetal Heart	heart
10	chr17:66470600-66471000	Enhancers	Fetal Intestine Small	intestine
11	chr17:66470600-66471000	Active TSS	Hela-S3	cervix
12	chr17:66470800-66471000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr17:66470800-66471200	Enhancers	Fetal Intestine Large	intestine
14	chr17:66470800-66478000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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