Variant report

Variant	rs11869428
Chromosome Location	chr17:17351304-17351305
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:17289655..17293959-chr17:17349314..17352438,5	MCF-7	breast:
2	chr17:17260627..17264124-chr17:17347628..17351557,3	MCF-7	breast:
3	chr17:17341170..17345071-chr17:17347034..17351413,6	MCF-7	breast:
4	chr17:17345336..17348353-chr17:17348575..17352300,3	K562	blood:
5	chr17:17344282..17356772-chr17:17394630..17405312,31	MCF-7	breast:
6	chr17:17342531..17346072-chr17:17347773..17351460,6	MCF-7	breast:
7	chr17:17335195..17342131-chr17:17347291..17351486,7	MCF-7	breast:
8	chr17:17340093..17354118-chr17:17394085..17402192,31	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108551	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11869417	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1242479	0.88[CEU][hapmap]
rs1242480	0.88[CEU][hapmap]
rs1242482	0.88[CEU][hapmap]
rs1242486	0.81[CEU][hapmap]
rs1569043	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16961730	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35649200	0.82[ASN][1000 genomes]
rs4924853	0.81[AMR][1000 genomes]
rs57000611	0.87[ASN][1000 genomes]
rs7223163	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73978916	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73978919	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs906405	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482648	chr17:17315268-17455442	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1065710	chr17:17328111-17391443	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv907729	chr17:17338536-17425279	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17344800-17353400	Weak transcription	Brain Germinal Matrix	brain
2	chr17:17346800-17352200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:17348200-17351400	Enhancers	Adipose Nuclei	Adipose
4	chr17:17348200-17351400	Enhancers	Fetal Thymus	thymus
5	chr17:17348200-17351800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr17:17348400-17351600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr17:17348400-17352000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr17:17348600-17351600	Enhancers	NH-A	brain
9	chr17:17348800-17351400	Enhancers	Liver	Liver
10	chr17:17349200-17352200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:17349600-17363200	Weak transcription	Right Atrium	heart
12	chr17:17350000-17351800	Enhancers	HUVEC	blood vessel
13	chr17:17350400-17351600	Enhancers	Hela-S3	cervix
14	chr17:17350400-17353800	Weak transcription	Fetal Muscle Leg	muscle
15	chr17:17350400-17363400	Weak transcription	Gastric	stomach
16	chr17:17350600-17352200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr17:17350800-17351600	Enhancers	Osteobl	bone
18	chr17:17351000-17351600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr17:17351000-17351600	Enhancers	NHDF-Ad	bronchial
20	chr17:17351000-17353000	Enhancers	HepG2	liver
21	chr17:17351200-17351400	Enhancers	Spleen	Spleen
22	chr17:17351200-17351800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr17:17351200-17354400	Weak transcription	A549	lung

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