Variant report

Variant	rs906405
Chromosome Location	chr17:17354293-17354294
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11869417	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11869428	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1569043	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16961730	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1969488	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35649200	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4924853	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57000611	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7223163	0.82[ASN][1000 genomes]
rs73978916	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73978919	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482648	chr17:17315268-17455442	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1065710	chr17:17328111-17391443	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv907729	chr17:17338536-17425279	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17349600-17363200	Weak transcription	Right Atrium	heart
2	chr17:17350400-17363400	Weak transcription	Gastric	stomach
3	chr17:17351200-17354400	Weak transcription	A549	lung
4	chr17:17351400-17354400	Weak transcription	Fetal Thymus	thymus
5	chr17:17353400-17354800	Enhancers	Brain Germinal Matrix	brain
6	chr17:17353600-17355000	Enhancers	Spleen	Spleen
7	chr17:17353800-17354600	Enhancers	Fetal Muscle Leg	muscle
8	chr17:17353800-17354800	Enhancers	Adipose Nuclei	Adipose
9	chr17:17354000-17355000	Enhancers	Hela-S3	cervix
10	chr17:17354000-17355600	Enhancers	HepG2	liver
11	chr17:17354200-17354600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr17:17354200-17358200	Weak transcription	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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