Variant report

Variant	rs11870472
Chromosome Location	chr17:33872649-33872650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1001441	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10512472	0.88[ASN][1000 genomes]
rs1071965	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12452797	0.85[ASN][1000 genomes]
rs1968578	0.86[ASN][1000 genomes]
rs28498569	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34054049	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7503168	0.87[ASN][1000 genomes]
rs9894057	0.87[ASN][1000 genomes]
rs9904644	0.91[AMR][1000 genomes]
rs9905788	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9906105	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33869000-33873200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr17:33869800-33877200	Weak transcription	Lung	lung
3	chr17:33870400-33881000	Weak transcription	K562	blood
4	chr17:33870400-33888600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:33870600-33873200	Weak transcription	GM12878-XiMat	blood
6	chr17:33870800-33873200	Weak transcription	Primary B cells from cord blood	blood
7	chr17:33871000-33872800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr17:33871000-33873200	Weak transcription	Adipose Nuclei	Adipose
9	chr17:33871000-33873400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr17:33871400-33873200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr17:33871600-33873600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr17:33871600-33873800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr17:33872200-33872800	Enhancers	Stomach Mucosa	stomach
14	chr17:33872600-33873200	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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