Variant report

Variant	rs11872433
Chromosome Location	chr18:40057666-40057667
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12606027	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12606301	0.83[EUR][1000 genomes]
rs1442655	0.83[EUR][1000 genomes]
rs16976159	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16976160	0.84[EUR][1000 genomes]
rs28557291	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57951898	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7235528	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7240278	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72642409	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73471179	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8082933	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8099219	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9956614	0.85[ASN][1000 genomes]
rs9965290	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909572	chr18:39938510-40064000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1055622	chr18:40040474-40057755	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
5	nsv1056192	chr18:40040474-40058395	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
6	nsv1062292	chr18:40044096-40057755	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1055614	chr18:40049038-40062317	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv1056694	chr18:40049038-40082667	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv2762899	chr18:40049050-40058395	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv909573	chr18:40050363-40131269	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	esv3316757	chr18:40053713-40057996	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv471800	chr18:40053772-40057679	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3316755	chr18:40053943-40057768	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3316756	chr18:40053979-40057849	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3316754	chr18:40053995-40057738	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3329959	chr18:40054040-40057673	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv10284	chr18:40054080-40057679	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	nsv576747	chr18:40054104-40058395	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
20	nsv576748	chr18:40054104-40059621	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv2421511	chr18:40055787-40057767	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
22	nsv817790	chr18:40055787-40058893	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
23	nsv514867	chr18:40056410-40057730	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
24	nsv1058002	chr18:40056557-40076785	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv2760483	chr18:40056569-40060995	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40057600-40060800	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links