Variant report

Variant	rs12606301
Chromosome Location	chr18:40023782-40023783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11872433	0.83[EUR][1000 genomes]
rs12606027	0.87[EUR][1000 genomes]
rs1442655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16976034	0.92[ASN][1000 genomes]
rs16976135	1.00[ASN][1000 genomes]
rs16976159	0.91[EUR][1000 genomes]
rs16976160	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28557291	0.86[EUR][1000 genomes]
rs57951898	0.91[EUR][1000 genomes]
rs60982116	0.97[ASN][1000 genomes]
rs61457950	0.95[ASN][1000 genomes]
rs7235528	0.84[EUR][1000 genomes]
rs7240278	0.91[EUR][1000 genomes]
rs72642409	0.91[EUR][1000 genomes]
rs73471179	0.85[EUR][1000 genomes]
rs8082933	0.91[EUR][1000 genomes]
rs8099219	0.91[EUR][1000 genomes]
rs9956614	0.81[EUR][1000 genomes]
rs9965290	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909572	chr18:39938510-40064000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Economic and political preferences (immigration/crime)	22566634	GWAS catalog

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40018400-40024200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:40022400-40027200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr18:40023000-40024000	Weak transcription	HSMMtube	muscle
4	chr18:40023200-40024600	Weak transcription	HSMM	muscle
5	chr18:40023400-40024200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr18:40023600-40025000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr18:40023600-40027200	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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