Variant report

Variant	rs11872557
Chromosome Location	chr18:29962301-29962302
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:29955010..29956616-chr18:29960394..29962375,2	MCF-7	breast:
2	chr18:29960482..29963119-chr18:29963659..29966463,2	MCF-7	breast:
3	chr18:29952322..29955283-chr18:29962192..29964133,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11872217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11872666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11873196	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11873369	0.83[AFR][1000 genomes]
rs11874328	1.00[AMR][1000 genomes]
rs11877705	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29950000-29966200	Weak transcription	Fetal Brain Female	brain
2	chr18:29952800-29963600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:29952800-29964600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr18:29952800-29973200	Weak transcription	Fetal Stomach	stomach
5	chr18:29953000-29966600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr18:29953400-29966600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:29954000-29974000	Weak transcription	HSMMtube	muscle
8	chr18:29954200-29963200	Weak transcription	HSMM	muscle
9	chr18:29954200-29970800	Weak transcription	Fetal Intestine Large	intestine
10	chr18:29954200-29974400	Weak transcription	Fetal Muscle Leg	muscle
11	chr18:29954400-29962400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr18:29954400-29962800	Weak transcription	Brain Anterior Caudate	brain
13	chr18:29954400-29963000	Weak transcription	Fetal Kidney	kidney
14	chr18:29954400-29972600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr18:29954600-29962600	Weak transcription	Brain Angular Gyrus	brain
16	chr18:29954600-29962600	Weak transcription	Brain Hippocampus Middle	brain
17	chr18:29954600-29963000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr18:29954600-29974200	Weak transcription	Fetal Intestine Small	intestine
19	chr18:29955400-29965400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr18:29955800-29971000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr18:29958000-29965600	Weak transcription	Right Ventricle	heart
22	chr18:29958800-29965200	Weak transcription	Fetal Brain Male	brain
23	chr18:29959000-29962400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr18:29959000-29963000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr18:29959000-29966000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr18:29959200-29962400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr18:29959200-29962600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr18:29959200-29962600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr18:29959200-29962600	Weak transcription	Osteobl	bone
30	chr18:29959200-29962800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr18:29959200-29964000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr18:29959200-29972600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr18:29959200-29975400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr18:29959400-29963000	Weak transcription	Fetal Heart	heart
35	chr18:29959400-29963600	Weak transcription	Liver	Liver
36	chr18:29960600-29966200	Enhancers	Stomach Mucosa	stomach
37	chr18:29960800-29969800	Weak transcription	Small Intestine	intestine
38	chr18:29961400-29964400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr18:29961400-29964400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr18:29961600-29962800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr18:29961600-29963600	Enhancers	Placenta Amnion	Placenta Amnion
42	chr18:29961600-29964200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr18:29961600-29964200	Enhancers	NHEK	skin
44	chr18:29961800-29962600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr18:29961800-29962800	Enhancers	Esophagus	oesophagus
46	chr18:29961800-29962800	Enhancers	Gastric	stomach
47	chr18:29961800-29963000	Enhancers	Aorta	Aorta
48	chr18:29961800-29963400	Enhancers	Pancreas	Pancrea
49	chr18:29961800-29963600	Enhancers	Ovary	ovary
50	chr18:29961800-29963800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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