Variant report

Variant	rs11873196
Chromosome Location	chr18:29945648-29945649
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29942732..29945838-chr18:30048998..30052033,3	MCF-7	breast:
2	chr18:29940994..29943496-chr18:29945012..29946568,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141441	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11872217	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11872557	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11872666	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11874328	1.00[AMR][1000 genomes]
rs11877705	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29926800-29951000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr18:29930000-29947600	Weak transcription	Esophagus	oesophagus
3	chr18:29930200-29953600	Weak transcription	Fetal Muscle Leg	muscle
4	chr18:29931200-29948000	Weak transcription	Brain Angular Gyrus	brain
5	chr18:29932800-29954000	Weak transcription	Ovary	ovary
6	chr18:29933000-29948000	Weak transcription	Brain Hippocampus Middle	brain
7	chr18:29937000-29946200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr18:29937600-29952600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:29938200-29948000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr18:29938400-29947600	Weak transcription	Gastric	stomach
11	chr18:29939000-29947600	Weak transcription	Left Ventricle	heart
12	chr18:29939000-29948000	Weak transcription	Right Atrium	heart
13	chr18:29939000-29951000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr18:29939000-29952800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr18:29939800-29947400	Weak transcription	Fetal Heart	heart
16	chr18:29940600-29947800	Weak transcription	Brain Substantia Nigra	brain
17	chr18:29941400-29946000	Weak transcription	Adipose Nuclei	Adipose
18	chr18:29942200-29946000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr18:29942400-29946600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr18:29942600-29946600	Weak transcription	HSMM	muscle
21	chr18:29942800-29947800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr18:29942800-29948000	Weak transcription	NHEK	skin
23	chr18:29942800-29948200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr18:29943000-29946000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr18:29943000-29946000	Weak transcription	HMEC	breast
26	chr18:29943000-29946400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr18:29945000-29946000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr18:29945000-29947400	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr18:29945000-29947800	Weak transcription	Fetal Brain Male	brain
30	chr18:29945200-29946400	Enhancers	Pancreas	Pancrea
31	chr18:29945400-29946800	Enhancers	Fetal Lung	lung
32	chr18:29945400-29947800	Enhancers	Liver	Liver
33	chr18:29945400-29948400	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr18:29945400-29948800	Enhancers	Fetal Intestine Small	intestine
35	chr18:29945400-29948800	Enhancers	Stomach Mucosa	stomach
36	chr18:29945600-29945800	Enhancers	Aorta	Aorta
37	chr18:29945600-29946200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr18:29945600-29946200	Enhancers	Lung	lung
39	chr18:29945600-29946400	Enhancers	Small Intestine	intestine
40	chr18:29945600-29946600	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr18:29945600-29947000	Enhancers	Fetal Intestine Large	intestine

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